Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002609.1 Hibiscus syriacus cultivar Beakdansim tig00005274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167397

Tables:   1   2   

This is table  2  of  2  ( 141 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145691--145789
42
2.4
43
77
11
100
21
18
23
37
1.94
147527--147578
21
2.3
23
87
6
72
40
7
0
51
1.30
147877--147927
26
2.0
24
82
14
59
45
0
1
52
1.12
154010--154049
2
20.0
2
100
0
80
50
0
0
50
1.00
159122--159188
29
2.3
29
84
0
89
52
2
4
40
1.37
159788--159835
19
2.5
19
93
3
78
35
31
14
18
1.91
159870--159926
21
2.7
21
94
0
96
19
21
19
40
1.92
159869--159936
21
3.2
20
87
4
73
25
20
19
35
1.96
160126--160163
17
2.2
17
95
0
67
34
36
2
26
1.71
160817--160870
24
2.2
24
93
0
90
20
18
20
40
1.91
161057--161093
14
2.6
14
91
4
56
51
21
21
5
1.68
163327--163443
20
5.8
20
86
0
162
33
20
17
28
1.96
163482--163559
20
3.9
20
89
0
111
12
17
25
43
1.85
163679--163715
14
2.6
14
100
0
74
48
21
0
29
1.50
165097--165167
21
3.4
21
76
3
81
19
18
36
25
1.94
165095--165220
42
3.0
42
80
6
148
23
16
37
23
1.94
165685--165728
20
2.2
20
95
0
79
50
22
13
13
1.77
165715--165782
20
3.4
20
85
0
91
36
25
19
19
1.94
165831--165906
33
2.3
34
88
2
109
14
19
19
46
1.84
165898--165966
20
3.5
20
84
7
95
17
20
26
36
1.94
165880--165967
40
2.4
37
78
14
92
17
21
23
37
1.94

Tables:   1   2

The End!