Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002611.1 Hibiscus syriacus cultivar Beakdansim tig00005277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119130

Tables:   1   2   

This is table  2  of  2  ( 157 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103280--103443
87
1.9
88
87
1
240
52
17
6
24
1.67
103445--103483
20
1.9
21
94
5
71
79
5
7
7
1.05
103603--103664
31
2.0
31
90
3
97
75
8
0
16
1.02
103598--103685
17
5.3
16
72
15
63
73
7
0
18
1.06
103829--103869
19
2.2
19
91
8
66
80
2
4
12
0.97
104932--105013
2
40.5
2
85
7
112
46
2
0
51
1.14
104951--105057
49
2.2
49
88
6
155
42
7
0
50
1.30
105154--105218
19
3.3
20
79
10
73
41
4
6
47
1.49
105201--105322
13
8.8
13
71
13
66
40
3
6
49
1.45
106577--106623
17
2.9
16
87
6
76
17
2
2
78
0.94
106575--106623
5
9.2
5
82
12
62
18
2
2
77
0.96
106575--106623
11
4.5
11
82
7
57
18
2
2
77
0.96
106658--106706
17
2.9
16
77
19
55
10
8
2
79
1.01
112099--112239
72
2.0
72
91
0
228
26
16
14
42
1.87
112108--112245
36
3.8
36
69
7
109
27
15
15
42
1.86
112330--112414
36
2.4
36
88
2
118
24
21
14
40
1.90
112253--112741
101
4.8
102
89
5
717
30
18
13
37
1.89
112242--112739
201
2.5
201
87
6
738
30
18
13
37
1.89
112631--112717
36
2.4
36
86
1
111
26
19
12
41
1.87
112702--112758
30
1.9
30
85
7
80
40
17
8
33
1.81
112763--112848
36
2.4
36
81
9
122
27
18
10
43
1.83
112804--112966
68
2.4
70
80
9
183
32
17
9
39
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114460--114502
5
8.2
5
90
10
68
18
2
0
79
0.85
114536--114582
22
2.2
21
85
7
60
10
4
2
82
0.88
114537--114581
15
2.9
15
84
12
56
8
4
2
84
0.84
115020--115071
9
5.7
9
80
13
61
36
3
7
51
1.49
114992--115132
50
2.8
50
73
15
123
42
2
6
48
1.43
115029--115113
41
2.1
40
82
6
100
40
3
5
50
1.44
115106--115562
2
231.0
2
63
22
96
45
5
3
45
1.43
115090--115132
10
4.6
10
83
13
56
39
0
6
53
1.28
115019--115132
20
5.8
19
67
26
69
39
3
7
50
1.47
115135--115271
11
12.5
11
67
20
56
48
7
1
42
1.39
115177--115290
21
5.0
23
69
25
66
48
6
2
42
1.42
115183--115261
27
3.0
27
78
16
76
48
5
1
45
1.32
115258--115354
35
3.0
32
77
15
103
46
4
5
44
1.44
115486--115534
21
2.3
20
86
10
71
42
4
4
48
1.40
116451--116534
38
2.2
38
89
6
125
22
15
34
27
1.94

Tables:   1   2

The End!