genome.fa.s2613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002613.1 Hibiscus syriacus cultivar Beakdansim tig00005286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176586

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12381--12458	34	2.2	35	84	8	97	12	38	1	47	1.50
12971--13015	15	2.8	16	80	10	56	24	31	26	17	1.97
15366--15411	23	2.0	24	86	4	67	30	0	28	41	1.56
15384--15415	17	1.9	17	93	6	57	28	0	28	43	1.55
31388--31420	17	1.9	17	100	0	66	45	18	12	24	1.83
35765--35802	20	1.9	20	88	0	58	21	26	10	42	1.85
37734--37767	16	2.1	16	100	0	68	17	11	26	44	1.83
47148--47255	22	5.0	22	93	1	182	26	28	25	18	1.98
50962--51013	16	3.2	17	72	22	58	36	23	0	40	1.55
55395--55507	21	5.4	21	80	9	106	40	17	23	17	1.91
59396--59699	124	2.4	125	91	0	484	31	17	27	23	1.96
60422--60687	36	7.4	36	85	6	281	35	24	19	20	1.96
60422--60669	108	2.3	108	85	2	354	36	23	20	19	1.95
61067--61423	51	6.8	53	85	3	449	33	18	24	23	1.97
61424--61792	53	6.9	54	88	3	523	29	14	28	27	1.95
61437--61807	108	3.4	107	92	2	609	29	14	28	28	1.95
61424--61840	55	7.7	53	84	7	451	30	14	27	27	1.95
71272--71303	3	10.7	3	100	0	64	34	0	0	65	0.93
71464--71520	3	19.0	3	100	0	114	33	0	0	66	0.92
74725--74798	28	2.6	29	79	12	82	48	24	0	27	1.51
74769--74811	20	2.2	20	87	8	61	48	25	0	25	1.51
74955--74988	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76819--76899	31	2.6	32	80	5	103	53	13	14	18	1.73
77648--77704	23	2.5	22	77	8	60	26	15	21	36	1.93
80111--80181	6	11.8	6	98	0	124	0	12	50	36	1.41
80405--81036	4	158.2	4	99	0	1239	25	0	24	49	1.52
84184--84411	48	4.7	48	71	5	161	24	43	8	23	1.81
84122--84251	48	2.8	45	75	3	125	22	43	7	26	1.80
84238--85349	99	11.2	99	91	1	1634	28	46	8	16	1.76
84400--85350	48	19.2	48	64	16	257	28	46	8	15	1.75
86324--86442	36	3.3	36	76	2	123	28	40	7	23	1.82
86507--86694	36	5.4	35	77	11	163	29	44	6	19	1.75
86495--86877	102	3.6	102	81	11	423	29	43	7	19	1.77
86758--86877	36	3.5	36	68	17	101	29	42	7	20	1.79
86319--86877	252	2.2	253	78	8	634	29	42	7	21	1.79
86750--86907	66	2.5	64	89	3	228	29	43	6	20	1.78
86861--86955	27	3.7	27	73	21	87	27	48	6	17	1.71
86894--86936	21	2.0	21	86	8	61	23	51	4	20	1.66
86870--87674	48	16.7	48	70	9	377	29	48	4	17	1.67
86882--87442	99	5.8	99	76	7	491	30	47	4	17	1.67
86882--87250	195	1.9	195	86	2	526	30	48	4	16	1.67
86882--87346	195	2.4	193	81	5	472	31	47	4	16	1.67
87332--87460	21	5.6	21	65	22	71	26	52	3	17	1.61
87773--87895	46	2.6	48	79	7	135	22	57	0	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89208--89269	24	2.6	23	75	12	63	53	1	0	45	1.10
89359--89460	53	1.9	53	82	7	127	39	10	4	45	1.61
90738--90763	13	2.0	13	100	0	52	30	23	7	38	1.83
94476--94509	2	17.0	2	100	0	68	50	0	0	50	1.00
96902--96972	3	23.7	3	80	5	72	40	1	0	57	1.07
96986--97038	21	2.5	21	96	0	97	39	39	11	9	1.74
98454--98707	110	2.3	110	95	1	447	40	8	9	40	1.69
98454--98741	110	2.6	110	90	1	371	39	9	10	40	1.72
100709--100760	28	1.9	26	88	7	77	21	9	9	59	1.57
100877--100930	14	3.8	14	82	4	63	24	14	9	51	1.71
103864--103905	2	21.0	2	100	0	84	50	0	0	50	1.00
104215--104250	10	3.3	11	88	11	56	86	13	0	0	0.58
104209--104251	16	2.8	16	89	3	61	86	11	2	0	0.67
104209--104250	21	2.0	22	90	4	68	85	11	2	0	0.68
104209--104265	22	2.6	22	80	8	71	85	8	5	0	0.72
106510--106729	114	1.9	114	90	1	352	33	15	20	31	1.93
107410--108075	116	5.9	116	84	5	855	38	14	19	28	1.91
107415--108075	229	2.9	229	94	1	1152	38	14	19	28	1.91
108019--108287	36	7.5	36	74	10	228	44	12	19	23	1.85
107904--108254	143	2.4	145	90	5	562	41	13	19	25	1.88
108190--108252	20	3.3	20	69	22	64	50	7	23	17	1.72
108019--108411	179	2.1	187	86	8	534	43	13	19	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108234--108516	124	2.3	122	85	6	364	42	15	18	22	1.89
108652--108754	3	33.7	3	78	7	109	39	0	0	59	1.04
110148--110176	2	14.5	2	100	0	58	51	0	0	48	1.00
110214--110467	110	2.3	110	95	1	447	41	8	9	40	1.68
110214--110501	110	2.6	110	91	1	407	39	9	10	40	1.72
113313--113676	181	2.0	181	100	0	728	33	21	18	26	1.97
116523--116589	30	2.2	30	86	0	89	35	23	28	11	1.91
118454--118495	20	2.1	20	86	8	59	16	7	21	54	1.65
125063--125147	37	2.3	37	97	0	161	36	14	5	43	1.69
126087--126139	16	3.3	16	77	15	56	71	0	0	28	0.86
126177--126206	10	3.0	10	100	0	60	40	0	40	20	1.52
127034--127070	19	1.9	19	89	10	58	51	8	0	40	1.32
126999--127112	60	1.9	60	85	3	158	44	11	6	37	1.65
127315--127353	15	2.6	15	91	0	60	41	25	12	20	1.88
130144--130261	59	2.0	59	100	0	236	38	30	10	20	1.86
130539--130596	31	1.9	30	89	3	89	27	8	13	50	1.71
131863--131920	29	2.0	28	83	9	73	36	6	1	55	1.37
132535--132599	28	2.3	28	100	0	130	29	18	32	20	1.96
134938--134988	23	2.3	23	83	6	61	45	13	23	17	1.84
141915--141956	20	2.1	20	86	8	59	16	7	21	54	1.65
143831--143856	12	2.2	12	100	0	52	30	7	15	46	1.74
145598--145630	6	5.5	6	100	0	66	0	15	51	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149300--149384	37	2.3	37	95	0	152	35	14	7	43	1.72
149973--150028	21	2.5	22	86	11	71	64	1	0	33	1.04
149973--150028	11	5.0	12	72	16	57	64	1	0	33	1.04
150348--150376	15	2.0	15	93	6	51	6	31	48	13	1.69
151349--151375	9	3.0	9	100	0	54	33	0	33	33	1.58
154069--154110	20	2.1	20	86	8	59	16	7	21	54	1.65
161083--161124	20	2.1	20	86	8	59	16	7	21	54	1.65
166626--166660	18	1.9	18	88	0	52	28	17	0	54	1.43
171801--171835	18	1.9	18	88	0	52	28	17	0	54	1.43
174611--174673	28	2.2	28	100	0	126	28	19	31	20	1.97

Tables:   1

The End!