genome.fa.s2628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002628.1 Hibiscus syriacus cultivar Beakdansim tig00005356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  279074

Tables:   1   2   

This is table  1  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--66	23	2.9	23	97	0	123	33	3	22	40	1.69
405--450	23	2.0	22	83	4	56	41	8	10	39	1.71
605--645	15	2.7	15	88	3	55	26	24	14	34	1.94
618--646	15	1.9	15	100	0	58	20	27	13	37	1.91
620--658	15	2.5	15	87	8	51	25	25	15	33	1.95
8797--8925	66	2.0	66	84	3	170	37	9	6	46	1.63
9214--9268	28	2.0	28	88	0	83	32	14	16	36	1.89
12896--12941	17	2.8	16	83	3	56	23	2	0	73	0.94
26246--26282	2	18.5	2	100	0	74	48	0	0	51	1.00
26693--26719	13	2.1	13	100	0	54	59	7	0	33	1.25
28791--28886	46	2.1	46	100	0	192	29	15	17	37	1.91
29508--29630	58	2.2	56	86	5	167	21	16	22	39	1.92
30778--30899	59	2.1	59	100	0	244	23	23	11	40	1.87
31378--31442	34	1.9	34	96	0	121	50	7	16	24	1.71
34185--34252	19	3.5	20	71	4	59	41	1	7	50	1.39
39335--39387	20	2.6	20	77	14	63	41	0	0	58	0.98
39531--39588	22	2.5	24	80	8	66	46	0	1	51	1.11
46952--46984	2	16.5	2	100	0	66	48	0	0	51	1.00
50150--50272	58	2.2	56	86	5	167	21	16	22	39	1.92
51418--51539	59	2.1	59	100	0	244	23	23	11	40	1.87
52018--52082	34	1.9	34	96	0	121	50	7	16	24	1.71
54825--54892	19	3.5	20	71	4	59	41	1	7	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59971--60023	20	2.6	20	77	14	63	41	0	0	58	0.98
60174--60231	22	2.5	24	80	8	66	46	0	1	51	1.11
68625--68660	15	2.4	15	95	0	63	30	11	19	38	1.86
68816--68860	24	1.9	23	81	4	54	24	26	20	28	1.99
74683--74736	23	2.3	23	87	0	81	37	1	3	57	1.27
76016--76091	35	2.2	35	92	0	125	39	23	1	35	1.63
76488--76735	130	1.9	130	92	0	415	36	16	12	34	1.86
77060--77122	28	2.3	27	78	8	63	46	1	3	49	1.27
77200--77233	16	2.0	18	88	11	54	64	5	2	26	1.30
79057--79135	23	3.4	23	89	0	104	17	24	25	32	1.97
79065--79143	23	3.4	23	87	3	97	18	24	25	31	1.98
80851--80905	23	2.4	23	87	0	83	81	1	14	1	0.85
80849--80907	6	10.0	6	76	10	59	81	1	15	1	0.86
80850--80916	12	5.6	12	79	10	59	80	2	13	2	0.94
84973--85040	22	3.0	22	97	2	127	26	27	26	19	1.99
85254--85312	30	2.0	30	93	0	100	33	23	3	38	1.72
85679--85851	67	2.6	67	87	4	224	17	27	27	27	1.98
91888--91976	22	4.0	22	92	1	133	29	25	24	20	1.99
92189--92247	30	2.0	30	93	0	100	33	23	3	38	1.72
92614--92786	67	2.6	67	87	4	224	17	26	27	28	1.98
93627--93660	11	3.0	11	83	8	50	11	11	8	67	1.42
96826--96855	15	2.0	15	100	0	60	26	6	13	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100818--100872	28	2.0	28	100	0	110	38	18	10	32	1.85
102565--102601	18	2.1	18	90	5	58	51	5	0	43	1.24
103683--103712	3	10.0	3	100	0	60	66	0	0	33	0.92
107683--107775	16	5.8	16	96	0	168	55	22	12	8	1.64
111458--111522	4	16.2	4	100	0	130	75	0	0	24	0.81
112023--112072	25	2.0	25	84	7	66	38	0	0	62	0.96
112815--112904	25	3.8	23	72	21	71	1	25	1	72	0.99
114350--114403	2	27.0	2	100	0	108	50	0	0	50	1.00
115839--115882	23	1.9	23	90	9	72	29	27	25	18	1.98
118739--118830	24	3.8	24	80	0	112	27	15	19	38	1.92
119002--119048	2	23.5	2	100	0	94	48	0	0	51	1.00
120747--120788	18	2.3	18	95	0	75	16	47	21	14	1.82
120740--120771	13	2.5	13	94	0	55	15	43	25	15	1.86
120834--120984	29	5.3	29	74	9	116	31	5	21	41	1.77
122303--122341	19	2.1	19	86	13	55	30	5	5	58	1.41
128132--128255	29	4.3	29	70	2	97	30	7	21	40	1.80
128108--128275	86	2.0	85	84	1	219	30	5	20	43	1.75
129604--129642	19	2.1	19	86	13	55	30	5	5	58	1.41
129655--129744	2	45.0	2	100	0	180	50	0	0	50	1.00
133042--133139	51	1.9	50	82	10	119	59	6	13	21	1.56
134877--134922	24	1.9	24	95	0	83	19	30	8	41	1.82
134940--135024	43	2.0	42	93	2	143	49	12	7	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136505--136570	21	3.0	20	77	18	51	60	4	6	28	1.40
136507--136556	23	2.1	24	85	7	66	64	4	8	24	1.38
136518--136570	21	2.4	21	87	6	70	62	3	1	32	1.24
140457--140489	16	2.1	16	94	0	57	33	0	21	45	1.52
140457--140498	9	4.9	9	80	11	52	30	0	23	45	1.53
140702--140762	31	2.0	31	100	0	122	21	22	26	29	1.99
140743--140800	21	2.7	22	79	17	68	20	22	29	27	1.99
144392--144553	64	2.5	65	85	8	199	33	20	20	25	1.97
145115--145195	22	3.7	22	86	0	117	17	22	32	28	1.96
146694--146851	64	2.5	64	82	7	169	34	18	20	26	1.95
147417--147497	22	3.7	22	86	0	117	17	22	32	28	1.96
154346--154405	22	2.7	22	92	0	102	16	25	31	26	1.96
156562--156725	74	2.2	76	81	7	192	30	26	19	23	1.98
156589--156747	74	2.1	74	80	4	178	31	27	17	23	1.97
159540--159613	20	3.7	20	90	0	112	18	25	24	31	1.98
159968--160037	34	2.1	32	84	5	86	31	15	28	24	1.96
160636--160683	19	2.5	20	82	3	62	54	6	8	31	1.55
161797--161836	21	1.9	21	89	0	62	30	10	10	50	1.69
162061--162155	21	4.6	20	81	13	111	22	36	18	22	1.95
162176--162228	20	2.7	20	93	0	88	18	28	24	28	1.98
165960--166016	23	2.6	22	83	8	71	24	31	14	29	1.94
165979--166043	24	2.8	23	90	4	103	24	29	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166459--166506	20	2.3	22	79	13	57	16	0	14	68	1.21
168576--168757	74	2.4	73	84	6	222	28	28	19	23	1.98
170515--170550	18	2.0	18	100	0	72	27	33	22	16	1.95
170488--170594	46	2.3	46	95	0	187	34	29	16	18	1.94
176127--176165	20	2.0	20	89	0	60	33	23	10	33	1.88
177695--178104	59	6.9	59	96	0	730	31	22	11	34	1.90
178426--178480	22	2.7	20	83	10	74	23	32	14	29	1.94
178539--178593	19	2.7	19	83	8	65	29	18	16	36	1.92
178424--178646	95	2.3	95	80	3	241	29	24	16	30	1.96
179223--179247	13	1.9	13	100	0	50	72	0	28	0	0.86
189165--189218	3	17.3	3	81	7	63	62	0	1	35	1.06
189165--189224	19	3.0	19	87	7	84	61	0	1	36	1.06
194263--194298	2	17.5	2	94	5	63	47	0	50	2	1.15
194339--194374	18	2.1	17	89	5	54	66	0	0	33	0.92
194600--194635	18	2.1	17	89	5	54	66	0	0	33	0.92
195211--195263	21	2.5	21	84	0	70	20	26	18	33	1.96
195836--195911	20	3.8	20	85	5	93	51	18	18	11	1.76
195934--196079	19	8.1	19	71	17	123	13	23	18	45	1.84
195956--196030	33	2.3	33	92	0	123	13	22	20	44	1.86
195969--196051	33	2.5	33	90	2	121	13	24	20	42	1.87
197766--198047	94	3.1	92	90	3	426	22	12	18	47	1.81
198138--198222	33	2.5	33	86	1	116	48	22	20	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198191--198228	20	1.9	20	100	0	76	50	28	15	5	1.66
198237--198322	33	2.5	35	88	7	122	10	22	20	46	1.81
198237--198359	19	6.6	19	74	14	114	11	21	20	46	1.82
198756--198878	42	2.9	42	80	2	122	22	36	17	22	1.95
198812--198878	21	3.2	21	66	6	55	23	35	20	19	1.95
200231--200266	14	2.6	14	95	0	63	33	0	22	44	1.53
200408--200471	33	1.9	33	93	6	112	50	25	15	9	1.74
200373--200481	19	5.9	19	83	13	131	49	22	16	11	1.77
200482--200566	19	4.7	19	67	15	63	12	23	21	42	1.87
200520--200612	20	4.7	19	69	18	64	21	16	23	38	1.92

Tables:   1   2