genome.fa.s2628.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002628.1 Hibiscus syriacus cultivar Beakdansim tig00005356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  279074

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202856--202882	14	1.9	14	100	0	54	7	11	29	51	1.64
202884--202909	3	8.7	3	100	0	52	0	30	0	69	0.89
203085--203138	24	2.2	24	93	0	90	40	20	18	20	1.91
203085--203152	24	2.8	24	84	0	64	38	20	17	23	1.93
204005--204072	21	3.3	20	76	8	64	35	17	23	23	1.95
204016--204071	21	2.7	21	88	0	85	39	17	25	17	1.92
218770--218805	19	1.9	19	94	5	65	72	5	0	22	1.05
220176--220220	20	2.3	19	84	3	54	35	0	2	62	1.08
220161--220226	29	2.3	29	84	5	80	37	0	1	60	1.06
220219--220319	3	33.7	3	91	0	166	62	0	3	33	1.14
220636--221080	113	4.0	113	91	0	687	28	18	14	37	1.90
221723--222579	82	10.5	81	94	1	1435	36	21	13	28	1.91
221723--222579	163	5.2	163	96	0	1563	36	21	13	28	1.91
223717--223767	8	6.6	8	82	6	61	0	15	0	84	0.63
223716--223767	16	3.5	15	82	7	70	0	17	0	82	0.66
223716--223767	23	2.3	22	86	3	68	0	17	0	82	0.66
223727--223764	19	1.9	20	89	10	60	0	18	0	81	0.69
227289--227320	11	3.1	11	91	8	50	65	0	15	18	1.27
235177--235212	19	1.9	19	94	5	65	72	5	0	22	1.05
236579--236623	20	2.3	19	84	3	54	35	0	2	62	1.08
236574--236629	29	2.0	30	83	13	75	37	0	1	60	1.07
236622--236710	3	29.7	3	90	0	142	61	0	4	33	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239629--239657	12	2.4	12	100	0	58	41	13	0	44	1.44
240144--240197	20	2.7	19	77	11	63	55	5	7	31	1.51
240949--241007	16	3.7	16	95	0	109	57	22	11	8	1.61
241782--241814	14	2.4	14	94	0	57	54	27	12	6	1.60
241752--241813	24	2.6	24	89	0	88	53	25	11	9	1.67
245706--245791	44	2.0	44	83	4	111	50	9	8	32	1.64
249074--249141	11	6.3	11	72	8	59	55	2	1	39	1.24
249182--249218	14	2.6	14	91	0	56	45	29	0	24	1.53
250313--250352	20	2.0	20	90	0	62	40	15	15	30	1.87
250462--250575	35	3.3	35	88	2	167	20	25	19	35	1.96
252209--252248	20	2.0	20	90	0	62	40	15	15	30	1.87
255336--255385	3	16.7	3	80	12	50	4	30	2	64	1.23
261698--261737	21	1.9	21	89	0	62	20	25	10	45	1.81
264467--264517	18	2.8	18	87	0	75	23	19	29	27	1.98
270359--270411	21	2.5	21	81	6	72	20	26	18	33	1.96
270401--270555	21	7.5	21	71	11	79	34	18	19	27	1.95
270401--270555	41	3.8	41	68	14	120	34	18	19	27	1.95
270339--270556	103	2.1	102	84	5	278	31	20	18	29	1.96
271110--271154	19	2.4	19	92	0	72	48	26	15	8	1.74
271172--271227	14	3.6	14	74	21	58	10	25	25	39	1.87
271164--271251	33	2.6	33	98	1	167	11	26	22	39	1.88
271219--271276	20	2.9	20	80	10	64	13	24	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273421--273487	21	3.2	21	66	6	55	23	35	19	20	1.95
273369--273487	42	2.8	42	81	5	107	22	36	17	23	1.95
274845--274880	14	2.6	14	95	0	63	30	0	25	44	1.54
274987--275053	19	3.8	19	77	18	81	44	20	20	13	1.85
275062--275185	33	3.8	32	84	8	169	15	22	18	43	1.87
275055--275187	66	2.0	66	94	0	230	17	21	18	42	1.90
277670--277723	24	2.2	24	86	0	72	38	20	18	22	1.93
278506--278557	21	2.5	21	87	3	70	38	17	23	21	1.93
278546--278603	20	2.9	20	89	0	71	29	24	20	25	1.99
278542--278612	20	3.5	20	82	0	70	35	22	19	22	1.96
278824--278931	20	5.4	20	80	4	128	38	22	21	17	1.93

Tables:   1   2

The End!