genome.fa.s2652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002652.1 Hibiscus syriacus cultivar Beakdansim tig00005424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65997

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401--538	74	1.9	74	84	6	190	24	21	23	29	1.99
3720--3782	24	2.6	24	100	0	126	41	7	4	46	1.54
4888--4922	5	6.8	5	96	3	61	57	0	40	2	1.14
5647--5816	35	4.9	35	75	16	133	26	15	4	53	1.60
5679--5756	39	1.9	39	87	7	111	24	15	3	56	1.56
5641--5805	74	2.2	75	89	2	260	27	17	3	51	1.62
6476--6515	12	3.4	12	80	19	57	22	7	0	70	1.12
6465--6522	23	2.5	23	94	5	100	20	8	0	70	1.13
6471--6537	23	3.2	20	82	14	64	20	8	0	70	1.14
7585--7641	27	2.1	27	96	0	105	21	8	24	45	1.80
15353--15408	25	2.2	25	100	0	112	26	37	14	21	1.92
15240--15547	164	1.9	165	82	2	395	30	28	16	24	1.97
15378--15699	134	2.4	138	80	2	355	29	27	17	25	1.97
17427--17603	32	5.1	32	72	18	115	29	15	2	52	1.57
17510--17603	32	2.9	32	82	7	118	28	17	3	51	1.61
17708--17759	4	13.0	4	80	15	63	23	0	1	75	0.91
19492--19518	11	2.5	11	100	0	54	37	7	7	48	1.59
24452--24912	44	10.6	42	85	4	221	36	21	21	19	1.95
24540--24982	44	10.2	43	89	1	618	36	23	21	18	1.95
24540--24982	131	3.4	129	87	3	618	36	23	21	18	1.95
24540--24982	175	2.5	174	89	3	651	36	23	21	18	1.95
26259--26320	27	2.3	27	85	2	79	20	11	22	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30979--31015	14	2.6	14	86	0	56	56	0	32	10	1.34
31144--31196	17	3.1	17	83	0	70	37	16	5	39	1.73
32865--32908	17	2.6	17	100	0	88	29	6	27	36	1.83
35866--35903	19	2.0	20	84	5	51	7	5	2	84	0.86
38605--38664	20	2.9	21	90	7	95	30	25	26	18	1.98
39982--40194	103	2.1	103	97	0	399	25	14	23	36	1.93
40218--40278	23	2.7	22	84	5	77	19	22	26	31	1.98
43057--43099	17	2.6	16	78	7	50	34	0	25	39	1.56
43988--44047	20	2.9	21	90	7	95	30	25	26	18	1.98
44081--44125	22	2.0	22	86	4	63	26	31	26	15	1.96
45423--45635	103	2.1	103	95	0	381	26	12	24	36	1.91
50718--50770	17	3.1	17	83	0	61	35	13	7	43	1.72
54378--54510	35	3.9	35	76	13	141	30	18	21	30	1.97
54378--54511	68	1.9	68	87	4	196	29	17	22	29	1.97
58473--58599	35	3.6	35	73	2	128	36	16	17	29	1.92
61171--61243	30	2.4	30	84	4	85	34	20	17	27	1.95
61986--62042	24	2.4	24	100	0	114	22	24	24	28	2.00

Tables:   1

The End!