Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002690.1 Hibiscus syriacus cultivar Beakdansim tig00005555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169424

Tables:   1   2   

This is table  2  of  2  ( 138 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
159708--159744
19
1.9
19
94
0
65
32
29
16
21
1.95
159770--159897
20
6.3
20
81
5
150
30
25
17
25
1.98
160047--160080
18
1.9
17
88
5
50
44
26
5
23
1.76
163013--163051
12
3.2
12
85
0
51
56
25
0
17
1.41
163216--163263
20
2.4
20
96
0
87
31
20
18
29
1.97
164830--164899
21
3.3
21
74
4
70
20
18
37
24
1.94
164830--164913
42
2.0
42
83
4
107
20
16
40
22
1.91
164833--164952
42
2.9
42
76
7
100
25
14
38
22
1.91
165428--165471
20
2.2
20
95
0
79
50
22
13
13
1.77
165458--165546
20
4.4
20
88
0
115
34
26
19
19
1.95
165551--165588
18
2.1
19
90
5
60
50
21
15
13
1.78
165589--165629
20
2.0
20
85
0
55
12
9
17
60
1.57
165646--165694
20
2.5
20
93
0
80
18
20
26
34
1.95
165646--165713
20
3.4
20
81
4
66
17
17
26
38
1.92
167513--167586
20
3.7
20
83
0
76
43
21
17
17
1.88
167982--168030
22
2.3
22
96
3
91
18
14
46
20
1.83
168223--168269
21
2.2
21
80
0
58
34
19
21
25
1.96
168172--168288
20
5.8
20
74
7
83
30
19
21
28
1.98

Tables:   1   2

The End!