genome.fa.s2700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002700.1 Hibiscus syriacus cultivar Beakdansim tig00005576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121970

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563--639	22	3.5	22	94	0	136	33	12	14	38	1.84
1301--2224	74	12.3	76	94	2	1615	24	19	21	34	1.96
2380--2414	14	2.5	14	90	0	52	57	0	0	42	0.99
4194--4236	21	2.0	22	86	4	61	51	2	0	46	1.13
5446--5624	60	3.0	60	80	5	202	31	20	5	42	1.75
8796--8854	2	30.0	2	96	3	111	50	0	0	49	1.00
10613--10649	13	2.8	13	100	0	74	16	24	5	54	1.63
12166--12190	12	2.1	12	100	0	50	0	24	0	76	0.80
14270--14310	19	2.2	19	91	4	66	75	0	7	17	1.02
14580--14639	31	1.9	32	86	10	88	61	5	1	31	1.27
16485--16922	36	12.7	36	70	18	209	42	12	18	26	1.86
16415--16867	102	4.4	102	71	16	292	41	11	18	27	1.85
16575--16922	36	10.0	36	74	15	284	42	11	18	27	1.85
16473--16922	138	3.3	139	77	10	442	41	12	19	27	1.86
16659--16831	66	2.6	65	89	2	247	42	12	19	26	1.86
16522--16902	204	1.9	203	89	1	593	41	11	19	27	1.85
16805--16900	19	5.3	19	64	26	64	44	7	19	28	1.77
18230--18427	95	2.2	89	79	13	212	31	19	17	31	1.94
18271--18452	95	1.9	95	88	2	276	31	19	18	30	1.96
22564--22618	24	2.3	22	77	17	56	70	3	9	16	1.27
22859--22924	19	3.5	19	91	0	96	34	1	25	37	1.66
26060--26135	31	2.5	31	80	8	91	46	7	6	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31788--31859	24	3.0	24	81	0	90	19	11	15	54	1.70
31768--31859	48	1.9	48	84	4	123	21	11	14	52	1.73
36622--36691	12	5.8	12	74	12	63	17	15	15	51	1.77
36622--36693	24	3.0	24	84	8	101	18	15	15	51	1.77
37897--37921	9	2.8	9	100	0	50	56	0	24	20	1.43
41458--41528	24	3.0	24	85	0	97	21	12	15	50	1.77
48310--48416	24	4.5	24	74	6	92	20	13	14	52	1.74
48310--48416	48	2.2	49	80	8	121	20	13	14	52	1.74
53144--53215	24	3.0	24	72	8	65	20	12	15	51	1.75
54307--54337	12	2.6	12	89	0	53	83	3	12	0	0.75
56740--56796	28	2.0	28	89	0	87	29	19	21	29	1.97
56931--57093	60	2.7	59	76	9	150	42	11	9	36	1.73
68499--68628	16	8.1	16	72	6	86	53	31	6	9	1.57
68530--68609	32	2.5	32	85	4	108	52	32	6	8	1.57
72550--72620	12	5.8	12	80	12	63	40	1	2	54	1.23
72574--72614	2	20.5	2	100	0	82	48	0	0	51	1.00
75834--75887	23	2.3	23	87	0	72	40	18	18	22	1.91
75953--75990	16	2.4	16	83	16	53	73	7	0	18	1.06
79481--79552	2	36.5	2	91	2	119	51	0	1	47	1.09
81314--81371	2	31.5	2	77	16	54	46	0	0	53	1.00
81320--81386	9	7.6	9	77	12	59	41	0	0	58	0.98
81313--81407	33	2.8	34	91	3	147	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81316--81400	42	2.0	44	84	9	113	44	0	0	55	0.99
81488--82041	276	2.0	276	99	0	1090	31	16	24	27	1.97
82788--83100	170	1.8	170	89	5	499	30	12	12	44	1.78
86985--87018	16	2.1	17	88	5	52	35	0	0	64	0.94
87926--87955	12	2.6	12	94	5	53	30	0	6	63	1.20
91824--91966	55	2.6	54	87	2	205	41	12	22	23	1.87
98595--98906	37	8.2	37	68	12	173	34	21	19	24	1.96
98603--98963	116	3.1	116	94	0	632	32	21	19	26	1.97
98914--99004	41	2.2	41	96	0	164	21	25	20	31	1.98
98798--99120	157	2.1	157	92	0	529	30	21	18	28	1.97
98607--99030	232	1.8	229	87	3	544	32	21	19	25	1.97
98682--99179	273	1.8	273	91	0	816	32	21	19	26	1.97
98955--99179	116	1.9	116	88	0	333	32	20	19	27	1.97
99106--99216	37	3.0	37	87	0	159	37	20	18	23	1.94
99769--99796	6	4.7	6	100	0	56	85	0	14	0	0.59
103192--103334	55	2.6	54	87	2	205	42	12	22	22	1.87
105473--105508	19	2.0	17	89	10	54	22	16	13	47	1.82
107616--107676	2	31.0	2	96	3	115	50	0	0	49	1.00
110043--110615	37	14.9	37	69	11	287	33	21	19	25	1.97
110043--110593	116	4.8	116	93	0	897	33	21	19	25	1.97
113602--113850	95	2.7	92	78	13	269	32	3	10	53	1.51
114944--115065	61	2.0	61	98	0	235	34	16	18	30	1.93

Tables:   1

The End!