genome.fa.s2705.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002705.1 Hibiscus syriacus cultivar Beakdansim tig00005582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  469953

Tables:   1   2   3   

This is table  2  of  3  ( 251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228415--228457	14	3.0	14	86	13	61	30	30	18	20	1.97
228544--228586	22	2.0	22	90	9	70	16	13	23	46	1.83
230963--230991	14	2.1	14	100	0	58	6	20	51	20	1.70
230986--231055	9	7.3	9	76	12	68	28	27	28	15	1.96
230986--231055	20	3.6	19	81	7	79	28	27	28	15	1.96
230986--231055	29	2.4	28	81	11	88	28	27	28	15	1.96
238203--238274	19	3.7	18	72	17	56	31	29	25	13	1.94
238221--238276	9	5.8	9	78	14	58	32	26	26	14	1.95
238203--238276	29	2.5	30	84	6	98	31	28	25	14	1.95
238239--238277	21	1.9	21	94	5	71	33	25	25	15	1.95
242917--242963	15	3.4	14	77	8	51	53	0	0	46	1.00
242923--243005	28	2.9	27	80	10	76	59	3	1	36	1.23
245132--245177	20	2.3	20	85	7	58	32	0	4	63	1.14
250027--250354	167	2.0	168	91	2	536	37	13	4	44	1.65
254533--254564	7	4.6	7	96	0	55	12	18	0	68	1.20
257837--257914	32	2.5	33	77	8	81	65	2	5	26	1.27
258061--258101	20	2.2	17	87	12	55	68	0	0	31	0.90
259507--260019	106	5.0	104	81	8	513	21	19	23	35	1.96
260692--260848	67	2.4	66	85	5	201	36	8	22	33	1.84
260827--260941	36	3.2	36	80	2	131	40	13	19	26	1.88
260857--261027	86	2.0	86	87	1	243	39	12	18	28	1.88
260944--261135	36	5.5	36	75	14	186	38	13	19	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260948--261211	102	2.6	101	90	1	420	36	13	20	30	1.90
261051--261131	37	2.2	35	89	8	126	39	16	18	25	1.91
262878--262937	13	4.8	13	74	10	54	1	16	3	78	0.97
265756--265795	10	4.2	9	84	9	53	82	0	2	15	0.77
265890--266012	37	3.6	36	75	18	118	67	1	4	26	1.18
265964--266008	23	2.0	21	83	8	54	66	2	2	28	1.15
266051--266090	20	2.0	21	85	5	55	60	0	5	35	1.19
275451--275521	27	2.6	27	93	0	124	49	26	1	22	1.58
278736--278895	65	2.5	64	87	5	234	29	16	21	33	1.95
278736--278937	65	3.1	63	78	11	221	28	16	22	33	1.95
280011--280054	21	2.1	21	86	0	61	34	15	38	11	1.84
292834--292918	23	3.8	22	73	14	84	31	21	16	30	1.95
294995--295065	19	3.7	19	100	0	142	21	16	30	30	1.95
295033--295189	65	2.4	64	83	10	194	26	15	24	33	1.95
301774--301830	21	2.8	21	89	5	82	10	14	14	61	1.57
307331--307409	31	2.5	31	77	4	88	30	30	20	18	1.97
310209--310248	19	2.2	18	90	4	62	12	17	50	20	1.78
310683--310857	87	2.0	87	100	0	350	40	13	11	34	1.81
310961--311209	20	12.3	20	82	5	234	26	20	18	34	1.96
311084--311250	81	2.1	81	80	8	180	25	20	17	36	1.94
312063--312116	24	2.2	24	93	0	90	20	18	20	40	1.91
314626--314680	19	2.8	19	83	2	65	38	21	21	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314587--314680	20	4.7	20	71	13	68	35	23	20	21	1.96
314653--314746	33	2.8	33	91	3	145	46	19	22	11	1.81
314653--314711	19	3.4	19	71	22	65	47	18	20	13	1.82
314633--314750	19	6.7	18	69	20	63	44	20	22	11	1.84
314746--314797	19	2.7	19	90	0	77	11	19	21	48	1.80
314763--314807	19	2.4	19	88	0	63	15	20	15	48	1.80
314914--314950	14	2.6	14	91	0	65	45	21	0	32	1.52
316300--316360	21	3.0	20	73	7	59	21	19	36	22	1.95
318729--318841	20	6.1	19	78	13	128	45	19	23	11	1.83
318737--318836	33	2.8	36	84	13	125	45	21	23	11	1.83
318868--318958	20	4.6	20	82	4	103	12	14	19	53	1.71
319513--319684	20	8.4	21	78	5	174	19	19	20	40	1.91
319513--319684	41	4.2	41	93	2	267	19	19	20	40	1.91
336339--336378	21	1.9	21	89	0	62	10	22	25	42	1.84
339514--339544	14	2.3	14	94	5	55	61	3	25	9	1.42
344888--344926	17	2.4	17	82	4	53	66	2	5	25	1.25
346613--346680	31	2.2	31	100	0	136	38	5	8	47	1.59
347234--347293	5	12.0	5	92	0	84	0	20	6	73	1.05
348661--348691	14	2.2	14	94	0	53	25	0	9	64	1.24
350616--350679	22	3.0	22	93	4	105	25	21	23	29	1.99
352480--352511	16	2.0	16	100	0	64	31	18	18	31	1.95
353027--353066	18	2.3	18	91	4	64	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353957--354127	53	3.3	53	97	1	319	20	21	17	40	1.91
360178--360413	115	2.0	113	95	3	391	41	19	13	25	1.88
362208--362472	135	2.0	135	100	0	530	43	15	6	35	1.71
370498--370757	85	3.1	85	87	2	378	36	10	12	40	1.78
371843--371882	21	1.9	21	89	0	62	37	12	0	50	1.41
375798--375828	3	10.3	3	100	0	62	32	32	0	35	1.58
381129--381171	21	2.0	21	95	0	77	27	9	11	51	1.69
381510--381552	21	2.0	21	95	0	77	18	30	13	37	1.90
383116--383145	15	2.0	15	93	0	51	40	3	46	10	1.54
385770--385804	17	2.1	17	94	0	61	25	5	8	60	1.49
385769--385810	17	2.3	18	84	12	59	28	4	7	59	1.44
386015--386081	21	3.3	21	77	10	77	41	0	1	56	1.08
386047--386080	6	5.7	6	100	0	68	47	0	0	52	1.00
388633--388982	112	3.1	112	90	0	540	25	16	14	44	1.85
394241--394768	127	4.2	127	92	1	871	21	23	21	33	1.98
395171--395276	34	3.2	33	83	4	140	38	3	3	53	1.37
395788--395858	21	3.4	21	84	7	99	25	26	29	18	1.98
397662--397719	20	2.7	22	71	20	59	56	0	0	43	0.99
400049--400171	31	4.0	31	90	2	178	34	21	18	24	1.96
404023--404092	20	3.6	19	75	12	70	40	11	17	31	1.85
404703--404809	31	3.5	30	87	5	144	37	20	17	24	1.94
410277--411011	148	5.0	147	84	1	940	28	14	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410282--411011	295	2.5	293	87	2	1045	28	14	22	35	1.93
418042--418081	21	1.9	21	89	0	62	25	40	25	10	1.86
423424--423487	28	2.3	28	94	0	110	48	14	0	37	1.44
433281--433323	17	2.6	17	86	13	56	55	0	2	41	1.12
437780--437872	41	2.3	40	76	14	93	30	20	17	32	1.95
437858--437995	42	3.3	41	68	13	111	30	16	21	31	1.96
438598--438646	22	2.2	22	89	7	73	40	10	14	34	1.79
439401--439550	73	2.1	73	96	2	275	29	6	14	50	1.67
439809--440138	90	3.8	86	78	11	257	34	14	16	34	1.89
439786--440138	85	4.2	81	77	11	278	34	14	15	34	1.89
445411--445580	42	4.1	41	75	18	156	36	17	18	27	1.93
445411--445569	82	1.9	83	87	6	234	35	16	19	27	1.94
445577--445664	40	2.2	40	89	2	131	40	13	15	29	1.86
445558--445735	41	4.3	41	81	3	153	36	12	15	34	1.86
447130--447226	42	2.3	42	82	7	108	34	15	18	31	1.92
447146--447227	42	2.0	42	85	4	112	29	13	20	36	1.91
456233--456478	43	5.9	43	78	9	188	33	26	16	23	1.96
456324--456478	38	3.8	38	77	12	141	30	25	16	27	1.96
456979--457037	20	3.0	20	90	9	86	55	10	6	27	1.58
457630--457759	29	4.5	28	79	11	106	34	5	12	47	1.64
461265--461323	20	3.0	20	90	9	86	55	10	6	27	1.58
461907--462045	29	4.8	28	82	7	145	33	6	13	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461839--462045	86	2.4	86	80	7	204	32	5	14	47	1.67
464374--464426	21	2.5	21	81	6	72	20	26	18	33	1.96
464416--464462	20	2.3	20	85	3	58	40	17	21	21	1.91
464453--464591	41	3.4	41	77	4	145	36	24	15	23	1.93
464456--464571	20	5.7	20	77	8	90	34	25	15	24	1.95
465066--465113	19	2.5	20	86	3	62	14	18	27	39	1.90
465066--465123	20	3.0	20	87	2	73	13	18	22	44	1.85
466438--466485	18	2.7	18	93	0	87	27	45	12	14	1.81
467020--467065	20	2.3	20	85	7	58	36	28	19	15	1.92
467117--467173	14	3.7	14	72	20	51	12	15	21	50	1.76

Tables:   1   2   3