genome.fa.s2712.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002712.1 Hibiscus syriacus cultivar Beakdansim tig00005598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92376

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4143--4191	21	2.3	21	85	3	71	53	16	0	30	1.43
4750--4838	28	3.1	29	93	4	153	17	35	26	19	1.94
4967--5034	29	2.3	29	87	0	91	7	32	33	26	1.84
4983--5054	29	2.5	29	100	0	144	8	27	37	26	1.85
5109--5291	81	2.3	81	98	0	348	18	37	22	20	1.94
5272--5339	29	2.3	29	84	0	82	8	30	33	26	1.87
5288--5367	29	2.8	29	96	0	142	8	26	36	28	1.86
12772--12820	2	24.5	2	95	0	89	46	2	0	51	1.12
13334--13372	20	2.0	20	89	0	60	46	2	5	46	1.38
15084--15124	21	2.0	21	100	0	82	31	24	14	29	1.95
16575--16682	57	1.9	57	92	0	180	38	12	12	36	1.81
18169--18327	77	2.0	79	89	2	241	34	17	10	37	1.83
23085--23142	20	2.9	20	86	0	71	29	12	27	31	1.92
29067--29125	21	2.8	20	87	10	75	18	32	18	30	1.95
36211--36264	3	17.7	3	77	11	56	38	0	1	59	1.08
36211--36253	18	2.4	18	96	0	77	41	0	0	58	0.98
36493--36567	39	1.9	39	86	0	105	21	42	14	21	1.88
39825--39907	24	3.5	24	73	12	71	24	15	15	44	1.85
41998--42462	130	3.5	133	85	4	561	32	18	13	36	1.89
42003--42474	135	3.5	134	84	5	596	31	17	13	36	1.89
42268--42707	233	1.9	234	84	1	587	32	17	13	37	1.88
42507--42764	134	1.9	135	85	6	362	32	19	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44494--44649	29	5.3	29	80	3	170	46	19	1	33	1.58
44494--44650	58	2.7	58	81	3	190	45	19	1	33	1.58
47847--48132	151	1.9	151	97	0	545	37	18	13	30	1.89
49554--49715	64	2.5	62	83	8	182	26	20	17	34	1.95
52998--53293	149	2.0	149	98	0	574	36	19	14	29	1.92
53457--53489	17	1.9	17	100	0	66	36	18	12	33	1.88
54702--54863	64	2.5	63	86	5	209	26	20	17	34	1.95
60333--60531	57	3.5	55	75	11	175	42	17	4	36	1.68
60337--60532	29	6.8	28	79	8	180	42	17	4	36	1.68
65153--65234	28	2.9	28	73	10	76	18	13	8	59	1.58
65410--65453	22	2.0	22	86	4	63	27	0	11	61	1.30
66322--66350	11	2.7	11	94	5	51	31	0	0	68	0.89
69110--69179	31	2.3	31	82	7	81	34	5	2	57	1.37
69163--69189	14	1.9	14	100	0	54	51	0	0	48	1.00
69183--69232	21	2.3	22	83	13	68	38	2	0	60	1.09
70499--70541	22	2.0	21	86	8	61	74	2	0	23	0.93
79008--79065	22	2.7	22	92	5	93	31	12	5	51	1.61
85426--85451	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!