genome.fa.s2723.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002723.1 Hibiscus syriacus cultivar Beakdansim tig00005617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204016

Tables:   1   2   

This is table  1  of  2  ( 145 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242--4307	27	2.4	28	92	2	107	33	19	6	40	1.76
4310--4434	45	2.8	45	96	0	223	22	24	21	31	1.98
4377--4746	76	4.9	76	92	1	584	26	19	21	32	1.97
4377--4738	151	2.4	152	91	1	575	26	19	20	33	1.97
4685--4782	45	2.2	45	85	1	126	31	21	15	31	1.94
4730--4933	76	2.7	76	92	1	322	30	19	16	33	1.94
4604--4857	119	2.1	121	88	1	377	29	20	16	33	1.95
4529--5258	195	3.7	195	88	2	1045	29	19	18	33	1.96
4875--4978	45	2.3	45	84	0	127	32	21	15	30	1.94
4804--5054	121	2.1	121	90	1	396	29	20	18	32	1.96
4920--5132	78	2.8	76	84	2	264	30	18	16	34	1.93
5198--5296	45	2.2	45	87	7	139	31	21	17	30	1.96
4996--5405	123	3.4	122	90	2	637	29	20	18	32	1.96
5316--5410	45	2.1	45	84	0	127	30	23	17	28	1.97
5579--5640	3	21.0	3	87	9	92	33	0	0	66	0.92
6753--6797	21	2.2	20	88	4	63	31	2	0	66	1.04
6771--6806	14	2.5	15	90	4	56	27	2	0	69	1.02
6757--6806	15	3.4	15	81	10	59	30	2	0	68	1.01
8621--8970	172	2.0	172	96	0	646	40	16	19	23	1.91
14193--14238	22	2.1	22	88	8	67	58	0	0	41	0.98
14193--14244	23	2.3	23	86	6	70	59	0	0	40	0.97
14211--14243	17	1.9	17	88	11	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20709--20743	14	2.6	14	90	4	54	25	0	2	71	1.00
24065--24099	2	17.5	2	100	0	70	51	0	0	48	1.00
25441--25502	24	2.6	24	79	2	72	30	25	24	19	1.98
25881--26553	333	2.0	333	97	0	1256	32	19	7	39	1.80
28489--28536	20	2.3	21	78	7	53	50	8	10	31	1.66
29644--29703	21	2.9	21	97	0	111	21	35	21	21	1.96
29740--29796	21	2.7	21	100	0	114	21	28	21	29	1.98
30797--31010	38	5.6	38	80	6	173	39	15	14	31	1.87
30797--31012	76	2.8	76	81	4	238	38	15	13	31	1.87
37723--37798	37	2.0	38	94	2	136	50	17	10	22	1.76
43677--43825	29	5.2	27	75	17	124	53	2	10	34	1.47
43682--43825	57	2.5	58	82	10	163	52	2	10	34	1.47
47632--47674	20	2.2	20	84	12	54	51	4	2	41	1.35
47981--48019	16	2.4	18	80	20	50	35	0	2	61	1.10
48013--48070	30	1.9	30	83	16	75	46	0	1	51	1.11
48161--48250	27	3.5	26	70	15	80	47	2	1	48	1.21
48150--48215	23	3.0	22	80	10	71	50	1	0	48	1.10
49668--49737	30	2.4	29	77	15	72	47	1	2	48	1.25
49668--49736	15	4.7	15	72	13	54	47	1	2	47	1.25
49867--50079	51	4.2	51	85	2	302	45	15	15	24	1.84
53201--53235	2	17.5	2	100	0	70	48	0	0	51	1.00
54286--54330	20	2.2	21	88	7	67	48	2	2	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66827--66869	20	2.2	20	86	0	59	34	20	13	30	1.92
74822--74957	67	2.0	67	91	0	218	25	28	30	15	1.96
77214--77421	103	2.0	102	92	0	344	23	15	14	45	1.84
77761--77798	2	19.5	2	94	5	69	50	0	0	50	1.00
78966--79013	25	1.9	25	83	8	62	62	0	2	35	1.07
91406--91433	13	2.2	13	100	0	56	14	7	0	78	0.95
100026--100144	35	3.4	34	74	11	105	44	1	4	49	1.31
100142--100260	35	3.4	35	73	15	118	47	5	5	42	1.47
100063--100228	81	2.1	80	81	10	196	46	3	3	46	1.35
107312--107357	23	2.0	23	86	0	65	30	26	23	19	1.98
107473--107541	25	2.8	25	100	0	138	27	26	28	17	1.97
109076--109236	64	2.5	63	84	8	191	27	22	17	32	1.96
110174--110216	2	21.5	2	100	0	86	48	0	0	51	1.00
112646--112690	23	2.0	23	86	0	63	26	26	26	20	1.99
114421--114581	64	2.5	64	82	5	182	26	21	18	33	1.96
118428--118498	21	3.0	25	71	23	71	12	18	0	69	1.20
118428--118518	47	2.0	46	82	6	112	12	20	0	67	1.23
120174--120198	2	12.5	2	100	0	50	52	0	0	48	1.00
120260--120360	35	2.9	35	95	0	175	31	27	29	10	1.91
120447--120537	24	3.8	24	82	2	121	38	18	16	26	1.92
123007--123036	13	2.3	13	94	0	51	16	23	43	16	1.87
128068--128326	35	7.5	33	74	16	179	45	4	7	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128068--128326	34	7.4	35	75	18	163	45	4	7	43	1.51
128101--128300	32	5.6	35	72	22	134	45	4	7	43	1.51
128058--128301	73	3.5	71	75	21	198	45	4	7	42	1.52
128033--128326	140	2.1	136	78	16	311	45	4	7	43	1.51
128051--128359	140	2.2	138	78	15	307	46	4	6	42	1.49
128379--128404	5	5.2	5	100	0	52	19	0	0	80	0.71
134864--135725	164	5.2	164	82	3	874	31	24	19	24	1.98
134854--135722	248	3.5	246	80	3	1019	30	24	19	24	1.98
135128--135716	84	7.2	81	75	5	315	30	24	19	25	1.98
134930--135684	412	1.8	413	87	3	1117	30	24	19	25	1.98
136299--136402	35	3.0	35	74	2	95	45	2	9	42	1.52
136324--136636	35	8.9	34	73	18	195	47	4	6	41	1.49
136361--136613	107	2.3	106	81	12	284	45	4	6	42	1.51
136412--136625	73	3.1	68	76	10	218	48	3	6	41	1.46
136432--136663	73	3.3	67	77	10	209	46	3	6	43	1.45
146454--146509	20	2.8	21	75	8	62	67	7	0	25	1.15
153972--154087	21	5.6	21	75	9	69	32	16	21	29	1.95
153910--154109	82	2.4	83	78	8	228	29	19	19	32	1.96
153970--154113	62	2.3	62	79	8	161	33	16	19	30	1.94
154620--154686	19	3.5	19	85	2	89	47	25	16	10	1.78
154682--154827	19	8.1	19	74	17	123	12	23	20	43	1.86
154723--154778	14	3.6	14	74	21	58	10	25	25	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154704--154802	33	3.0	33	95	1	171	11	25	23	40	1.87
156972--157038	21	3.2	21	66	6	55	23	35	20	19	1.95
156920--157038	42	2.8	42	81	5	107	22	36	18	22	1.95
158375--158410	14	2.6	14	90	0	54	27	2	25	44	1.68
158517--158563	19	2.5	19	96	0	85	44	21	21	12	1.85
158588--158738	19	8.7	19	63	21	62	15	21	19	43	1.87
158592--158718	33	3.9	32	85	8	184	14	22	18	44	1.86
158585--158717	66	2.0	66	94	0	230	16	22	18	42	1.88
161010--161034	12	2.1	12	100	0	50	0	28	0	72	0.86
161209--161262	24	2.2	24	90	0	81	40	20	16	22	1.91
162047--162098	21	2.5	21	84	3	70	40	13	21	25	1.89
162087--162165	20	3.9	20	74	9	61	36	20	18	24	1.95
162125--162174	20	2.5	20	80	0	73	38	22	18	22	1.94
162388--162475	20	4.4	20	78	5	106	39	23	20	15	1.91
162506--162579	19	4.5	16	83	16	66	13	20	18	47	1.82
162502--162569	19	3.8	19	87	12	101	13	22	17	47	1.82
164153--164240	42	2.1	42	82	2	115	23	14	38	22	1.92
164583--164620	20	1.9	20	94	0	67	34	31	13	21	1.91
164608--164680	20	3.7	20	92	0	110	35	24	24	15	1.94
164611--164694	40	2.1	40	84	2	107	39	23	22	14	1.91
164683--164746	14	4.3	14	75	19	58	53	23	14	9	1.69
164667--164739	33	2.2	33	97	0	137	49	21	16	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164667--164757	33	2.8	33	89	3	103	49	24	15	10	1.76
164753--164849	19	5.6	19	69	22	88	12	18	21	47	1.81
164775--164833	14	3.9	14	74	20	55	10	15	23	50	1.74
164758--164849	33	2.8	33	96	0	166	11	17	21	48	1.79
164834--164888	20	2.8	19	83	8	65	16	23	23	36	1.94
165429--165476	18	2.7	18	93	0	87	14	12	45	27	1.81
166795--166837	20	2.2	20	86	0	59	51	23	18	6	1.70
167312--167490	41	4.4	41	77	2	164	23	16	24	35	1.95
167332--167442	20	5.5	20	77	6	98	23	16	27	33	1.95
167312--167487	20	8.6	20	70	11	74	23	17	24	34	1.95

Tables:   1   2