Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002723.1 Hibiscus syriacus cultivar Beakdansim tig00005617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204016

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
167379--167508
41
3.2
41
85
2
163
21
19
23
36
1.95
167444--167527
20
4.1
21
73
10
75
23
20
17
38
1.93
167517--167569
21
2.5
22
81
6
74
33
18
26
20
1.96
167604--167649
19
2.3
20
81
7
58
26
17
28
28
1.98
169986--170030
23
2.0
23
86
0
63
26
28
24
20
1.99
170009--170312
149
2.0
149
97
0
572
34
20
17
27
1.94
170849--170876
2
14.0
2
100
0
56
50
0
0
50
1.00
171104--171157
22
2.4
22
84
9
65
35
22
0
42
1.54
171205--171239
18
1.9
18
88
11
54
22
17
5
54
1.64
171821--171865
21
2.1
21
87
0
63
15
24
28
31
1.96
186435--186466
16
2.0
16
100
0
64
62
0
12
25
1.30
186451--187068
182
3.4
181
87
2
812
43
12
16
28
1.84
188921--188976
24
2.5
22
77
13
60
39
0
8
51
1.33
189256--189285
15
2.0
15
93
0
51
20
13
50
16
1.78
189640--189678
18
2.2
18
90
0
60
61
0
33
5
1.18
191148--191197
19
2.6
19
87
6
66
28
4
10
58
1.49
191339--192274
397
2.4
396
91
2
1495
36
17
15
30
1.91
191339--192274
198
4.7
197
91
3
1484
36
17
15
30
1.91
192638--192675
15
2.5
15
91
0
67
15
44
5
34
1.69
193811--193848
12
3.2
12
92
0
58
39
2
31
26
1.70
195175--195213
12
3.2
12
77
0
51
38
2
10
48
1.51
195175--195209
18
1.9
18
88
0
52
34
2
11
51
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195667--196700
198
5.2
198
88
4
1290
38
16
13
31
1.87
199847--200364
198
2.6
197
80
8
550
38
14
15
31
1.87
201029--201105
37
2.1
38
87
4
113
46
2
1
49
1.23

Tables:   1   2

The End!