genome.fa.s2755.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002755.1 Hibiscus syriacus cultivar Beakdansim tig00005678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  722678

Tables:   1   2   3   4   

This is table  4  of  4  ( 450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561288--561450	53	3.1	53	91	0	263	39	15	16	27	1.89
561466--561566	48	2.1	48	87	5	150	46	16	9	26	1.79
561580--561622	18	2.4	18	96	0	77	27	34	11	25	1.91
562174--562225	20	2.6	20	78	6	61	30	25	13	30	1.94
562694--562853	65	2.5	66	85	7	204	30	23	18	27	1.98
562825--562873	19	2.6	19	87	9	66	24	26	20	28	1.99
568214--568267	2	27.0	2	100	0	108	50	0	0	50	1.00
570421--570630	65	3.3	63	80	11	221	30	24	19	25	1.98
576712--576868	53	3.0	53	93	0	260	37	18	18	25	1.93
590681--590749	28	2.4	27	79	13	68	43	1	1	53	1.18
590729--590822	21	4.7	19	75	11	82	43	0	1	55	1.06
590754--590808	14	4.1	14	76	6	60	34	0	1	63	1.05
590739--590822	40	2.3	38	75	20	90	40	0	1	58	1.06
592316--592350	15	2.2	16	90	5	54	68	28	0	2	1.04
598095--598135	3	15.0	3	85	14	54	70	0	0	29	0.87
598099--598140	18	2.3	18	87	0	66	73	0	0	26	0.83
598477--598627	43	3.6	43	72	18	147	21	17	33	26	1.96
598470--598626	83	1.9	83	92	2	262	22	18	33	25	1.96
599581--599656	6	12.3	6	81	10	82	0	17	0	82	0.66
599588--599656	31	2.2	31	78	14	63	0	17	0	82	0.67
599582--599646	25	2.6	26	92	7	109	0	15	0	84	0.62
606861--606931	30	2.4	29	86	6	97	32	7	18	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610529--610570	17	2.5	18	88	11	63	45	2	7	45	1.44
612210--612235	12	2.2	12	100	0	52	0	30	0	69	0.89
612920--612970	22	2.3	23	86	3	68	68	0	1	29	1.00
614431--614545	57	2.0	58	98	1	223	20	14	19	45	1.85
614555--614596	18	2.3	19	79	4	50	4	26	9	59	1.48
616610--616639	2	15.5	2	93	6	53	53	0	0	46	1.00
619773--619857	42	2.0	43	97	2	163	25	17	4	51	1.65
622341--622483	56	2.6	56	82	8	166	38	13	11	35	1.82
624478--624540	24	2.7	24	82	7	67	52	0	4	42	1.22
624530--624582	19	2.7	19	72	13	54	49	5	0	45	1.26
624617--624679	26	2.4	26	75	12	67	34	3	3	58	1.30
626215--626256	21	2.0	22	90	4	68	42	2	2	52	1.27
626195--626277	29	2.9	28	76	16	82	39	1	7	51	1.37
627079--627142	31	2.1	30	82	2	74	35	14	28	21	1.92
627769--627839	31	2.3	31	82	4	90	26	22	11	39	1.88
627782--627845	31	2.1	30	91	2	101	21	26	14	37	1.92
628174--628206	17	1.9	17	93	0	57	33	0	0	66	0.92
628318--628625	167	1.8	167	96	0	571	44	9	2	43	1.49
631491--631537	16	2.9	16	100	0	94	19	17	19	44	1.87
631524--631591	26	2.6	26	95	0	127	26	11	14	47	1.79
631903--631945	21	2.1	20	82	4	50	60	13	11	13	1.59
635773--636005	98	2.3	99	82	6	265	26	7	17	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638759--638805	22	2.2	20	85	10	67	14	12	19	53	1.73
641822--642211	139	2.8	136	79	6	414	43	13	12	29	1.82
642219--642271	25	2.1	26	89	3	81	50	24	9	15	1.73
644275--644316	13	3.2	13	100	0	84	0	45	0	54	0.99
645594--645639	22	2.1	22	84	8	58	36	19	19	23	1.95
646463--646503	21	2.0	21	90	0	64	24	21	26	26	2.00
646535--646585	19	2.7	19	90	0	75	35	17	9	37	1.83
646902--647085	44	4.2	44	73	8	167	35	14	21	28	1.93
654206--654239	16	2.1	16	100	0	68	23	11	5	58	1.55
654475--654514	19	2.1	19	95	0	71	12	25	37	25	1.91
654877--654911	17	2.1	17	100	0	70	28	37	0	34	1.58
656627--656651	13	1.9	13	100	0	50	44	0	16	40	1.47
657122--657193	22	3.2	22	78	7	74	25	23	26	25	2.00
657151--657199	22	2.2	23	81	3	55	32	24	22	20	1.98
661294--661430	11	13.1	10	68	19	59	3	20	2	73	1.09
661291--661375	14	6.1	14	72	23	72	1	24	1	72	0.98
661287--661381	14	7.5	13	70	22	60	1	22	2	74	0.98
661286--661384	45	2.1	47	85	12	134	1	21	2	75	0.96
661291--661397	56	1.9	57	83	9	139	2	20	1	74	1.03
661288--661422	6	21.8	6	70	18	64	2	20	2	74	1.06
661347--661431	15	5.5	15	69	19	50	4	17	2	75	1.08
667862--667901	21	1.9	21	89	0	62	30	7	7	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669848--669887	20	2.0	20	95	0	71	12	25	37	25	1.91
672473--672549	2	38.5	2	97	0	145	49	0	1	49	1.09
676264--676321	21	2.6	22	83	8	73	32	1	5	60	1.29
683541--683582	21	2.0	21	90	0	66	26	2	7	64	1.32
687958--688172	40	5.2	41	75	8	177	28	16	16	37	1.91
687968--688161	84	2.3	84	81	6	243	27	14	17	40	1.89
689037--689086	23	2.1	23	82	14	57	56	0	2	42	1.11
689607--689633	5	5.4	5	100	0	54	0	18	37	44	1.50
689564--689621	18	3.2	19	76	18	77	1	15	34	48	1.55
697216--697252	9	4.1	9	85	0	56	27	0	0	72	0.84
697558--697594	19	2.0	20	84	10	51	54	0	0	45	1.00
697830--697858	12	2.3	13	94	5	51	0	10	6	82	0.83
698360--698421	21	3.0	21	76	6	72	40	1	0	58	1.08
699884--700022	64	2.2	64	85	7	185	28	17	24	30	1.97
699993--700061	18	3.8	18	94	0	120	26	15	31	26	1.96
699999--700070	18	4.1	18	90	1	74	30	15	29	25	1.96
702673--702754	23	3.6	23	73	17	82	25	21	25	26	2.00
703083--703123	21	1.9	22	85	5	57	36	12	19	31	1.89
708079--708202	36	3.4	35	78	11	126	30	16	29	24	1.96
708079--708148	18	3.9	18	96	0	122	31	15	30	22	1.95
716060--716164	45	2.3	46	86	4	151	32	18	19	30	1.95
716152--716191	18	2.3	18	86	4	55	32	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720591--720699	41	2.7	41	80	0	119	28	19	19	33	1.96
720676--720761	41	2.1	41	86	4	120	26	13	18	40	1.88

Tables:   1   2   3   4

The End!