genome.fa.s2771.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002771.1 Hibiscus syriacus cultivar Beakdansim tig00005711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40486

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469--533	21	3.1	21	80	6	69	40	15	29	15	1.88
2383--2426	18	2.4	19	88	3	63	29	2	11	56	1.46
2539--3458	183	4.9	188	89	9	1320	36	15	16	31	1.90
4905--4985	3	27.0	3	75	0	72	35	6	34	23	1.80
4893--4969	36	2.1	36	90	0	118	35	9	35	20	1.85
4893--4981	12	7.4	12	84	0	88	35	7	34	21	1.82
6431--6953	182	2.9	182	95	1	915	35	14	16	33	1.89
9402--9466	25	2.6	25	80	0	85	35	9	13	41	1.77
9808--9870	23	2.7	23	90	0	90	38	6	17	38	1.75
9808--9880	23	3.2	23	86	3	85	35	5	19	39	1.75
10682--10724	22	1.9	23	85	4	61	41	11	9	37	1.74
11705--11760	21	2.7	20	78	8	58	33	23	17	25	1.96
11786--11940	20	7.7	20	86	4	231	32	27	19	21	1.97
11748--11941	40	4.8	39	83	5	210	35	26	18	19	1.95
11748--11940	60	3.2	60	82	5	237	35	26	18	19	1.95
12557--12734	34	5.1	34	74	17	143	46	17	22	13	1.83
12571--12755	19	10.4	19	76	19	193	46	17	21	14	1.83
12571--12755	53	3.5	53	95	1	318	46	17	21	14	1.83
12770--12868	20	5.4	19	81	14	127	15	23	16	45	1.84
12738--12843	53	2.0	52	85	1	140	18	22	16	41	1.90
12751--12868	53	2.2	53	93	3	202	15	24	16	44	1.86
12975--13011	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14878--15050	19	9.6	19	75	12	141	45	22	20	11	1.83
14972--15028	14	3.7	14	75	20	51	43	22	22	10	1.84
14953--15045	33	2.8	33	95	0	168	46	21	21	10	1.81
14912--15050	52	2.7	52	74	8	147	46	21	21	10	1.82
15046--15123	19	4.4	19	81	15	103	7	16	28	47	1.74
15062--15088	14	1.9	14	100	0	54	7	14	29	48	1.71
15046--15155	52	2.1	53	87	1	159	9	17	27	46	1.78
17018--17082	21	3.1	21	80	4	87	49	15	24	10	1.76
17067--17123	14	3.7	14	75	20	60	43	22	24	8	1.81
17018--17133	33	3.3	33	86	9	142	47	18	24	10	1.79
17513--17705	20	9.6	20	82	5	219	20	19	25	34	1.96
18269--18327	11	5.5	11	76	6	50	22	8	5	64	1.41
18385--18423	20	1.9	21	89	5	62	69	2	7	20	1.26
19676--20047	111	3.3	110	92	2	593	32	11	11	44	1.76
20473--20517	22	2.1	21	83	4	54	40	8	6	44	1.62
19351--20850	804	1.9	803	93	1	2621	36	9	10	42	1.73
20480--20960	111	4.3	111	90	2	689	32	12	10	44	1.76
21398--21689	111	2.6	111	86	3	410	33	10	7	48	1.64
21699--21819	23	5.3	23	87	0	152	37	18	7	37	1.79
21699--21819	46	2.6	46	90	0	179	37	18	7	37	1.79
21699--21832	69	1.9	69	86	0	187	37	19	8	35	1.82
21714--21832	23	5.2	23	87	0	166	37	19	6	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28658--28712	20	2.8	20	91	0	83	25	27	3	43	1.71
30228--30273	3	15.3	3	86	8	58	39	0	0	60	0.97
30221--30274	27	2.0	27	88	0	81	38	0	0	61	0.96
30222--30282	27	2.2	26	80	11	68	39	1	0	59	1.08
31848--31966	58	2.1	55	83	12	143	16	14	5	63	1.46
31857--31975	30	4.2	28	81	14	129	18	14	5	61	1.52
31984--32055	30	2.4	30	76	2	74	23	9	8	58	1.57
32333--32392	31	1.9	32	83	10	79	13	8	5	73	1.23
38196--38232	19	1.9	19	94	0	65	21	32	21	24	1.98

Tables:   1

The End!