Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002786.1 Hibiscus syriacus cultivar Beakdansim tig00005741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  242387

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148578--148625
21
2.3
20
82
10
60
37
2
10
50
1.49
148534--148609
14
5.3
14
74
4
62
38
2
7
51
1.45
148534--148623
29
3.1
28
88
4
110
38
2
7
51
1.43
148578--148636
21
2.8
21
82
10
59
37
1
10
50
1.46
148971--149070
46
2.3
43
86
10
139
53
2
3
42
1.28
155845--155872
2
14.0
2
100
0
56
50
0
0
50
1.00
155967--156021
21
2.7
20
82
5
65
49
5
0
45
1.25
156006--156084
2
42.0
2
77
16
71
46
1
1
50
1.17
156094--156135
21
2.0
21
90
4
66
50
4
2
42
1.36
156081--156155
23
3.3
23
76
14
68
48
8
2
41
1.47
156856--156939
28
3.0
28
98
0
159
35
16
21
26
1.94
156952--157302
71
4.9
71
83
6
367
37
11
19
31
1.88
156952--157269
141
2.2
142
82
10
384
38
11
20
30
1.88
157250--157355
52
2.0
53
85
1
142
34
10
19
34
1.86
157175--157421
126
2.0
125
81
7
293
37
9
19
33
1.84
157317--157624
74
4.3
72
73
14
235
35
9
20
35
1.84
164003--164060
23
2.5
23
88
0
80
31
36
8
24
1.85
175526--175554
14
2.1
14
93
6
51
31
0
3
65
1.09
176509--176613
40
2.6
40
90
3
158
23
20
33
22
1.97
184686--184764
41
1.9
41
92
5
133
29
16
12
41
1.85
185950--185991
15
2.8
15
85
0
66
19
4
33
42
1.72
186477--186528
24
2.2
24
82
6
61
34
1
3
59
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
189713--190081
54
6.8
54
91
0
576
32
17
17
32
1.93
193536--193571
16
2.2
17
90
5
56
63
0
8
27
1.23
194931--195091
18
8.9
18
67
16
66
45
6
3
44
1.46
195012--195095
2
43.0
2
76
15
70
50
5
0
44
1.26
195128--195182
18
2.9
18
78
5
56
34
0
16
49
1.46
195478--195512
2
17.5
2
100
0
70
51
0
0
48
1.00
197534--197620
21
4.1
22
82
10
110
29
13
21
34
1.92
197690--197761
35
2.1
35
94
0
126
37
18
11
33
1.86
201185--201251
21
3.2
21
71
12
57
29
11
17
40
1.86
206587--206743
83
1.9
83
91
0
260
35
21
17
26
1.95
209297--209349
26
2.0
26
92
0
88
30
3
18
47
1.67
220759--221235
55
8.5
55
86
6
627
30
15
17
37
1.90
226729--226778
20
2.5
20
90
6
75
30
16
30
24
1.96
227182--227704
55
9.5
55
88
0
731
30
15
17
36
1.91
229579--229623
20
2.2
20
88
7
65
35
26
0
37
1.57
234181--234275
42
2.3
41
89
3
138
43
1
25
30
1.62
238351--238394
20
2.2
20
88
4
63
38
25
0
36
1.56

Tables:   1   2

The End!