Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002801.1 Hibiscus syriacus cultivar Beakdansim tig00005766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101911

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
448--475
2
14.0
2
100
0
56
50
0
0
50
1.00
9402--9449
23
2.1
23
84
7
62
37
10
20
31
1.87
9287--9449
87
1.9
87
92
0
272
41
12
15
31
1.84
9468--9968
199
2.5
198
84
4
607
30
15
15
37
1.89
12054--13010
182
5.3
182
92
1
1501
28
15
12
43
1.83
13311--13362
23
2.3
23
86
0
68
40
9
21
28
1.84
13389--13436
23
2.1
23
84
7
62
37
10
18
33
1.85
13275--13436
87
1.9
87
92
0
270
42
12
14
30
1.83
13445--13955
201
2.6
196
77
9
516
31
15
14
38
1.87
15999--17006
182
5.6
181
90
2
1456
28
15
12
43
1.84
17736--17786
27
1.9
27
84
4
68
49
7
3
39
1.51
24712--24783
8
8.9
8
74
21
53
48
0
1
50
1.09
24662--24783
42
2.9
41
79
17
112
46
0
2
50
1.20
24717--24802
40
2.1
42
82
10
106
47
1
0
51
1.08
24897--24957
23
2.7
23
79
2
61
40
4
0
54
1.22
24952--25022
20
3.5
20
71
7
52
47
2
0
49
1.16
24972--25026
22
2.5
22
84
3
65
40
3
0
56
1.17
25027--25087
14
4.3
13
74
12
50
42
1
3
52
1.27
25096--25134
20
2.0
20
85
10
53
48
0
2
48
1.15
25248--25280
13
2.4
14
95
5
59
63
0
0
36
0.95
25248--25285
14
2.6
14
91
4
58
60
0
0
39
0.97
25354--25433
42
1.9
42
86
0
115
56
8
6
28
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25672--25738
23
3.0
21
74
20
55
65
1
4
28
1.21
33104--33136
15
2.1
16
88
5
50
9
24
15
51
1.72
33886--33919
16
2.1
16
94
0
59
32
26
8
32
1.87
36506--36545
15
2.8
14
85
14
55
22
0
0
77
0.77
37415--37576
54
3.0
54
90
0
234
34
16
24
24
1.95
38666--38933
76
3.6
76
86
2
389
23
20
21
34
1.97
38867--39025
45
3.5
45
89
1
219
23
22
21
32
1.98
38957--39242
76
3.8
76
92
0
428
25
19
19
34
1.96
39226--39599
188
2.0
191
98
1
727
31
14
22
31
1.94
44372--44399
6
4.7
6
100
0
56
67
0
0
32
0.91
51139--51242
45
2.3
47
83
8
133
25
23
24
27
2.00
51177--51392
76
2.9
76
90
1
328
25
21
20
32
1.98
51066--51318
121
2.1
122
88
4
368
25
20
22
31
1.98
51326--51429
45
2.3
45
91
0
163
25
20
19
34
1.96
51066--51430
197
1.9
197
93
0
631
25
20
21
32
1.97
51617--51677
3
20.0
3
79
3
68
42
0
0
57
0.98
53058--53124
26
2.6
26
79
9
75
28
4
1
65
1.21
53385--53413
2
14.5
2
100
0
58
48
0
0
51
1.00
60322--60790
237
2.0
237
99
0
929
29
21
21
27
1.99
62187--62238
25
2.1
25
100
0
104
51
28
0
19
1.47
66283--66324
21
2.0
20
86
4
57
38
14
7
40
1.73
66876--66909
11
3.1
11
100
0
68
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66876--66929
23
2.4
22
84
3
63
61
0
1
37
1.07
85168--85209
21
2.0
20
86
4
57
38
14
7
40
1.73
85706--85755
2
25.0
2
100
0
100
50
0
0
50
1.00
89060--89105
17
2.6
18
82
3
58
73
6
6
13
1.22
89388--89449
30
2.1
30
82
8
74
56
4
19
19
1.59
89478--89509
15
2.2
14
94
5
55
81
0
0
18
0.70
89558--89631
30
2.3
32
86
9
107
51
2
17
28
1.59
89613--89643
16
1.9
16
93
0
53
41
0
25
32
1.56
89645--89958
125
2.5
121
86
5
425
44
14
17
24
1.85
89859--89893
12
2.8
12
95
4
61
82
0
0
17
0.66
89645--89994
125
2.8
121
81
8
352
46
12
16
24
1.82

Tables:   1

The End!