genome.fa.s2804.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002804.1 Hibiscus syriacus cultivar Beakdansim tig00005771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124072

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10167--10195	15	2.0	15	93	6	51	20	0	3	75	0.94
11025--11054	13	2.3	13	94	0	51	86	13	0	0	0.57
13284--13357	24	3.1	24	98	0	139	31	16	22	29	1.96
15725--15782	11	5.0	12	78	21	54	79	8	10	1	1.01
15747--15781	10	3.5	10	85	14	54	82	8	8	0	0.83
15732--15785	23	2.3	23	84	9	74	81	9	7	1	0.94
18845--18908	33	1.9	33	87	6	94	29	15	14	40	1.86
18977--19055	36	2.2	35	84	8	97	29	15	10	45	1.78
19190--19343	67	2.3	65	81	3	182	27	17	14	39	1.89
19311--19496	101	1.8	101	87	4	277	34	18	10	36	1.85
19719--20165	139	3.2	136	82	5	506	32	26	16	24	1.96
20600--20635	16	2.2	16	90	0	54	33	25	5	36	1.79
21432--21487	5	10.8	5	76	14	51	17	5	1	75	1.09
21442--21488	22	2.1	22	84	0	58	17	6	2	74	1.12
25167--25219	2	26.5	2	100	0	106	50	0	0	49	1.00
28809--28875	31	2.2	31	83	5	82	29	10	11	47	1.74
28822--28881	31	1.9	31	96	0	111	26	10	11	51	1.69
29013--29062	19	2.6	18	84	12	64	54	2	2	42	1.23
29058--29120	23	2.6	23	85	7	72	53	0	6	39	1.26
29047--29111	26	2.5	27	80	7	89	55	0	3	41	1.15
30859--30892	3	11.3	3	100	0	68	67	0	0	32	0.91
33549--33595	24	1.9	24	86	4	67	44	27	6	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37968--38001	17	1.9	18	94	5	61	47	0	2	50	1.16
38154--38221	34	2.0	34	97	0	127	22	20	11	45	1.83
42770--42837	34	2.0	34	97	0	127	22	20	11	45	1.83
42893--42923	3	10.3	3	100	0	62	67	0	0	32	0.91
44717--44751	17	2.1	17	89	5	54	25	2	17	54	1.57
45258--45360	3	34.3	3	69	11	50	35	7	2	53	1.45
45258--45323	29	2.2	28	80	17	80	39	9	0	51	1.34
51997--52105	17	6.5	17	71	10	80	20	12	7	59	1.57
52036--52101	33	2.0	34	84	3	89	21	13	9	56	1.65
54500--54541	22	1.9	22	85	0	57	57	2	0	40	1.12
63962--64257	160	1.8	161	88	0	450	43	15	13	27	1.84
66445--66486	21	2.0	21	90	0	66	40	11	30	16	1.85
68371--68419	19	2.6	19	93	0	80	34	2	10	53	1.47
68735--68775	19	2.2	19	95	0	73	34	2	9	53	1.47
68163--68872	356	2.0	356	97	0	1348	37	10	20	32	1.86
69017--73157	200	20.8	200	91	1	6538	37	15	15	31	1.89
69017--73157	599	6.9	600	91	1	6524	37	15	15	31	1.89
69017--73157	799	5.2	798	92	1	6608	37	15	15	31	1.89
74632--74705	6	12.3	6	91	0	94	36	2	33	27	1.71
76155--76264	51	2.1	53	81	9	138	38	17	20	24	1.93
75972--76459	252	1.9	250	85	4	662	37	15	16	30	1.90
76321--76862	177	3.0	177	85	7	766	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76319--76875	186	3.0	184	87	5	792	37	14	16	31	1.89
79259--79984	200	3.6	197	82	7	799	39	14	16	30	1.88
79985--80151	87	1.9	86	91	1	271	32	11	11	43	1.78
80069--80113	23	2.0	23	100	0	90	35	15	8	40	1.79
80170--80214	16	2.8	16	100	0	90	20	31	17	31	1.96
82229--82259	3	10.3	3	100	0	62	32	0	0	67	0.91
83239--83361	31	4.0	31	91	4	169	39	21	17	21	1.93
83790--83835	19	2.4	19	100	0	92	23	15	10	50	1.75
87779--87886	31	3.5	31	96	2	191	38	20	20	20	1.93
90514--90544	10	3.1	10	100	0	62	32	0	0	67	0.91
97103--99944	134	21.3	134	79	5	2390	31	22	16	29	1.96
97117--99967	268	10.7	267	80	5	2744	31	22	16	29	1.96
102166--102315	39	3.8	39	76	10	137	16	20	25	37	1.93
104463--104617	39	4.0	39	89	0	211	34	25	23	16	1.95
110040--110142	51	2.0	51	100	0	206	37	15	13	33	1.87
112309--112345	17	2.1	18	90	5	58	59	0	0	40	0.97
115201--115254	20	2.7	20	94	0	90	29	12	27	29	1.94
123902--123949	20	2.4	19	79	6	51	56	6	4	33	1.44

Tables:   1

The End!