genome.fa.s2819.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002819.1 Hibiscus syriacus cultivar Beakdansim tig00005799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213166

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165574--165689	19	6.6	19	74	17	92	12	19	22	44	1.85
165596--165653	14	3.9	14	79	16	71	10	17	24	48	1.78
165579--165669	32	2.8	33	94	3	166	12	18	21	47	1.81
165642--165708	20	3.4	20	85	2	82	14	17	23	43	1.87
166190--166233	18	2.5	18	85	3	63	13	15	43	27	1.85
167552--167610	20	3.0	20	87	0	73	42	22	18	16	1.89
167636--167686	19	2.7	19	100	0	102	9	21	27	41	1.84
168122--168193	20	3.6	20	92	0	99	26	18	29	26	1.98
168121--168235	20	5.7	20	79	6	97	24	16	26	33	1.96
168224--168295	21	3.5	21	78	3	92	15	26	19	38	1.91
168224--168316	41	2.3	41	98	0	141	16	25	18	39	1.91
168224--168316	20	4.6	20	75	4	87	16	25	18	39	1.91
168588--168615	9	3.1	9	100	0	56	10	21	0	67	1.20
169208--169239	15	2.0	17	88	11	50	18	3	12	65	1.38
174776--175021	116	2.1	117	87	3	345	33	18	21	26	1.96
175073--175168	44	2.2	44	79	3	104	28	26	17	28	1.98
182867--182994	66	1.9	66	96	0	238	32	15	24	28	1.95
194095--194144	19	2.6	19	93	0	82	34	16	6	44	1.72
196710--196782	31	2.4	31	85	0	101	53	12	5	28	1.60
197175--197357	50	3.7	49	77	10	158	33	6	16	43	1.73
197219--197285	23	2.8	23	82	11	64	34	7	13	44	1.72
197173--197357	98	1.9	98	83	4	239	32	5	17	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197147--197367	25	8.9	26	68	9	77	33	5	17	43	1.72
197508--197612	51	2.1	51	83	3	131	45	13	17	23	1.83
198018--198119	33	3.1	33	84	6	127	32	13	15	38	1.87
201197--201231	11	3.3	11	92	4	54	68	0	28	2	1.04
212337--212392	29	1.9	29	85	0	76	41	16	0	42	1.48
212593--212733	60	2.3	60	82	7	153	41	3	22	32	1.71

Tables:   1   2

The End!