genome.fa.s2829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002829.1 Hibiscus syriacus cultivar Beakdansim tig00005820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137735

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3532--3690	65	2.5	65	84	5	189	28	18	22	31	1.97
4064--4148	31	2.8	29	79	13	82	44	9	14	31	1.76
11783--35104	541	43.3	542	91	1	37242	38	9	16	34	1.82
28276--28308	15	2.3	15	89	5	50	51	3	12	33	1.54
35400--35515	48	2.4	47	81	9	128	41	7	19	31	1.80
35400--35523	49	2.6	46	78	13	133	41	7	20	30	1.80
42704--42780	31	2.5	31	78	2	82	28	28	25	16	1.97
48223--48427	110	1.9	110	81	0	248	48	16	13	21	1.80
49443--49495	19	2.8	18	91	5	79	71	1	3	22	1.12
51692--51722	16	1.9	16	93	0	53	51	19	12	16	1.76
57937--57998	32	1.9	32	86	0	88	32	16	20	30	1.95
64671--64741	20	3.5	20	70	14	65	74	7	1	16	1.10
67228--67265	20	1.9	20	88	0	58	44	15	13	26	1.83
67330--67356	14	1.9	14	100	0	54	29	22	22	25	1.99
67395--67451	22	2.6	22	97	0	105	42	10	17	29	1.83
67887--68183	45	7.3	44	68	23	186	32	12	27	27	1.93
67932--68153	34	5.9	35	70	21	153	34	12	26	27	1.92
67876--68196	79	4.1	79	93	0	536	34	12	26	27	1.92
73489--73546	13	4.7	13	72	12	50	27	39	1	31	1.67
75949--76061	35	3.2	35	84	1	127	28	34	3	33	1.74
76749--76815	26	2.6	26	92	0	116	25	35	0	38	1.56
81367--81418	22	2.4	22	96	0	95	32	13	7	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84114--84149	11	3.1	11	92	8	54	72	0	0	27	0.85
85774--85854	3	27.0	3	92	0	135	67	0	1	30	0.98
86182--86956	113	6.9	113	95	0	1383	30	18	12	38	1.89
87681--88151	83	5.7	83	93	2	808	37	21	13	27	1.90
87681--88151	165	2.8	165	95	2	831	37	21	13	27	1.90
89297--89367	9	7.3	9	79	14	79	0	16	0	83	0.66
89296--89371	16	4.6	17	75	18	81	0	19	0	80	0.72
96701--96732	15	2.1	15	94	0	55	40	6	21	31	1.78
103988--104062	3	25.0	3	91	0	114	66	0	2	30	1.05
111113--111159	21	2.2	21	84	3	58	21	25	14	38	1.92
111124--111171	21	2.3	21	96	0	87	25	20	12	41	1.87
111340--111382	13	3.2	13	90	3	68	0	41	0	58	0.98
111371--111459	46	1.9	47	95	2	162	31	21	14	32	1.93
111870--111922	21	2.5	21	81	6	72	20	26	18	33	1.96
111912--111963	21	2.5	21	87	3	70	38	17	23	21	1.93
111897--112128	41	5.7	41	72	7	132	33	19	19	28	1.96
111983--112045	20	3.0	21	79	4	74	22	20	17	39	1.92
112035--112146	20	5.6	20	84	4	136	37	20	20	21	1.94
112671--112764	33	2.8	33	88	7	129	43	23	21	11	1.85
112705--112764	19	3.4	18	72	23	65	45	23	20	11	1.83
112782--112875	33	2.8	33	93	1	152	12	23	22	41	1.88
112857--112903	20	2.3	20	82	13	69	12	23	14	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114999--115121	42	2.9	42	80	2	122	22	36	17	22	1.95
115055--115121	21	3.2	21	66	6	55	23	35	20	19	1.95
117929--117982	24	2.2	24	90	0	81	40	20	16	22	1.91
118755--118806	21	2.5	21	87	3	70	38	17	23	21	1.93
118774--118883	41	2.7	39	72	17	98	36	21	19	22	1.95
118791--118882	20	4.6	20	69	2	76	38	22	18	20	1.94
119095--119142	20	2.4	20	100	0	96	35	27	22	14	1.93
119169--119236	19	3.8	19	83	12	92	14	22	17	45	1.85
120819--120911	42	2.2	42	86	0	132	21	15	41	21	1.89
120847--120907	21	2.9	21	69	9	61	22	13	40	22	1.89
121253--121349	20	4.8	20	89	2	124	35	22	20	21	1.96
121253--121372	40	3.0	41	80	6	131	37	22	20	20	1.94
121336--121394	19	3.4	19	71	22	65	47	18	18	15	1.83
121352--121408	14	3.7	14	75	20	60	50	22	15	10	1.74
121336--121413	33	2.4	33	97	0	147	46	20	19	14	1.84
121418--121520	19	5.6	19	74	14	72	13	21	23	41	1.88
121466--121520	20	2.8	19	83	8	65	16	23	23	36	1.94
122054--122101	18	2.7	18	93	0	87	14	12	45	27	1.81
123736--123784	22	2.3	21	80	10	55	22	12	42	22	1.86
123743--123786	22	2.0	22	90	0	70	18	13	45	22	1.84
123980--124045	20	3.3	20	78	0	78	30	15	25	28	1.96
124086--124128	21	2.0	22	90	4	70	39	13	25	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124581--124632	21	2.5	21	93	0	86	34	28	9	26	1.88
126275--126339	35	1.9	33	90	6	103	33	26	15	24	1.95
135678--135761	26	3.5	26	78	18	117	44	10	23	21	1.84
135702--135779	20	3.6	20	78	18	84	43	10	24	21	1.83
135678--135821	46	3.1	46	87	0	189	43	9	21	25	1.83

Tables:   1

The End!