Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002840.1 Hibiscus syriacus cultivar Beakdansim tig00005846_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246210

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144405--144443
2
19.5
2
100
0
78
48
0
0
51
1.00
145205--145369
60
2.8
61
75
8
151
35
20
4
40
1.74
152191--152222
17
1.9
16
93
6
55
62
21
9
6
1.47
152197--152238
18
2.4
17
84
11
50
61
16
14
7
1.53
154055--154094
20
2.0
21
85
5
55
40
12
5
42
1.64
157458--157497
21
1.9
21
89
0
62
25
40
25
10
1.86
159194--159235
17
2.6
16
82
10
50
14
0
26
59
1.35
160162--160193
17
1.9
16
93
6
55
62
21
9
6
1.47
160168--160209
18
2.4
17
84
11
50
61
16
14
7
1.53
166050--166076
2
13.5
2
100
0
54
48
0
0
51
1.00
174790--174839
13
3.6
13
81
8
55
76
0
0
24
0.80
174790--174837
16
3.1
16
85
5
64
77
0
0
22
0.78
174808--174840
10
3.2
11
87
12
52
66
0
0
33
0.92
175021--175094
32
2.3
32
92
0
121
25
13
28
32
1.94
182657--182700
15
2.6
17
79
17
56
29
36
20
13
1.91
182669--182702
15
2.3
15
100
0
68
35
32
17
14
1.91
182814--182882
24
2.8
26
83
12
85
31
24
5
37
1.79
182847--182882
12
3.0
12
91
0
63
36
25
5
33
1.79
184164--184596
120
3.6
120
85
0
605
23
17
25
34
1.96
184146--184596
241
1.9
242
91
0
751
22
17
25
34
1.96
185294--185485
75
2.5
77
87
5
275
20
24
32
22
1.98
188072--188111
21
1.9
21
89
0
62
10
25
40
25
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
188094--188154
23
2.7
23
82
12
74
18
24
36
21
1.95
188094--188155
21
2.9
21
85
9
72
17
25
35
20
1.95
193908--193964
22
2.6
22
97
0
105
14
21
45
19
1.85
193930--194138
75
2.8
76
86
3
278
21
22
32
23
1.98
194373--194836
120
3.9
121
84
2
601
22
17
28
31
1.97
194366--194836
241
2.0
241
94
0
834
22
17
27
31
1.97
194733--194923
87
2.2
87
81
6
219
23
16
27
32
1.96
194612--195044
207
2.1
208
85
1
591
23
18
26
32
1.97
194819--195085
121
2.2
121
86
0
363
23
18
25
32
1.97
195114--195277
64
2.6
64
92
0
256
32
11
18
37
1.87
195604--195667
24
2.6
25
90
7
103
28
18
14
39
1.90
196011--196262
95
2.6
95
89
6
357
30
18
17
32
1.94
196812--196853
3
15.0
3
85
14
54
28
0
2
69
1.01
198657--198686
2
15.0
2
100
0
60
50
0
0
50
1.00
199178--199235
28
2.1
27
84
6
73
32
5
1
60
1.29
203984--204031
22
2.1
23
84
3
62
75
4
18
2
1.07
209174--209736
113
5.0
113
90
1
871
37
15
19
27
1.92
210058--210113
3
20.0
3
76
20
50
30
0
1
67
1.01
210058--210113
13
4.2
13
77
8
51
30
0
1
67
1.01
218368--218450
23
3.6
22
82
9
96
39
1
1
57
1.14
218426--218483
15
3.3
18
71
26
52
41
1
0
56
1.09
218582--218650
21
3.2
21
76
12
59
50
2
0
46
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
218591--218669
22
3.6
21
72
21
56
45
3
1
49
1.28
218580--218637
29
2.0
30
86
3
82
55
1
0
43
1.10
220326--220360
5
7.0
5
86
0
52
20
14
20
45
1.85
220328--220356
10
2.9
10
100
0
58
20
10
20
48
1.79
220577--220602
5
5.2
5
100
0
52
23
0
0
76
0.78
222434--222472
20
2.0
20
94
0
69
20
5
33
41
1.74
222437--222484
20
2.4
20
85
0
60
29
6
25
39
1.80
230879--230947
21
3.3
21
80
13
81
0
47
0
52
1.00
230880--230961
15
5.5
15
75
10
62
1
45
0
53
1.08
230893--230943
11
4.6
11
81
13
52
0
49
0
50
1.00
230920--230970
15
3.4
15
77
0
57
3
43
0
52
1.19
242247--242315
25
2.8
25
95
0
120
8
31
34
24
1.86

Tables:   1   2

The End!