genome.fa.s2866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002866.1 Hibiscus syriacus cultivar Beakdansim tig00005912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168452

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23084--23122	20	2.0	20	100	0	78	17	25	25	30	1.97
23241--23280	20	1.9	21	85	10	55	37	37	10	15	1.80
24555--24592	3	13.0	3	86	5	51	68	2	28	0	1.03
26497--26538	21	2.0	21	90	0	66	23	19	28	28	1.98
26567--26606	20	1.9	21	85	10	55	37	37	10	15	1.80
31235--31261	6	4.5	6	100	0	54	33	51	14	0	1.43
34017--34322	170	1.8	170	91	1	515	26	15	23	34	1.95
34265--34366	44	2.3	44	94	0	186	23	17	26	32	1.97
34084--34493	214	1.9	214	91	1	678	25	17	23	32	1.97
35338--35384	18	2.7	17	80	6	58	0	17	2	80	0.80
35424--35468	19	2.4	18	85	10	63	0	13	2	84	0.72
42538--42572	15	2.3	16	90	9	56	68	5	8	17	1.35
47181--47239	22	2.7	23	78	5	68	54	0	0	45	0.99
47264--47368	24	4.4	25	67	13	69	44	0	2	52	1.15
47526--47678	75	2.1	74	96	3	281	43	11	16	28	1.83
50818--50876	31	2.0	29	90	6	91	54	8	10	27	1.63
55185--55226	5	8.4	5	82	10	50	52	0	4	42	1.22
58851--59019	64	2.6	64	81	1	169	34	15	19	30	1.93
58851--59013	32	5.1	32	80	0	146	34	15	19	30	1.93
58851--59033	32	5.7	32	78	2	143	34	14	19	31	1.92
62415--62533	24	5.0	24	85	4	159	40	18	15	26	1.90
67924--68134	29	7.2	29	82	4	178	42	18	5	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67924--68134	58	3.6	57	82	4	201	42	18	5	34	1.72
68905--68998	27	3.5	27	95	0	170	36	13	14	35	1.86
78791--78830	20	2.0	20	85	0	53	17	25	12	45	1.83
79778--79903	54	2.3	54	97	0	234	35	21	14	28	1.92
79640--80050	191	2.2	191	90	0	633	34	24	14	26	1.94
79831--80186	137	2.6	137	87	1	498	34	24	14	26	1.94
80353--80405	3	17.7	3	100	0	106	33	0	0	66	0.92
81044--81085	19	2.2	19	95	0	75	14	26	21	38	1.91
81291--81316	5	5.2	5	100	0	52	23	0	0	76	0.78
81420--81660	118	2.0	119	79	5	256	37	6	6	49	1.55
86003--86028	13	2.0	13	100	0	52	15	46	7	30	1.74
89000--89047	23	2.0	24	84	4	62	56	0	0	43	0.99
95180--95219	20	1.9	22	85	10	57	40	35	5	20	1.74
99884--99937	22	2.4	24	76	17	62	40	31	3	24	1.72
101048--101099	23	2.3	23	80	9	63	42	0	1	55	1.10
102286--102349	23	2.8	21	82	15	74	37	7	1	53	1.40
102346--102405	27	2.3	27	82	5	79	40	1	1	56	1.19
103032--103082	5	10.2	5	100	0	102	60	0	19	19	1.36
103194--103255	30	2.1	30	82	11	74	32	9	9	48	1.69
105124--105157	17	1.9	18	88	5	52	50	0	5	44	1.26
105913--105988	35	2.2	35	87	0	107	43	19	0	36	1.52
110326--110400	35	2.1	35	87	0	105	45	22	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110396--110472	35	2.2	35	83	0	100	37	0	20	41	1.53
115802--116193	195	2.0	195	89	1	606	27	14	18	40	1.89
116550--116601	18	2.9	18	94	0	86	5	15	11	67	1.40
123122--123153	16	2.0	16	93	0	55	31	6	9	53	1.58
128856--128887	16	2.0	16	93	0	55	31	6	9	53	1.58
134591--134623	16	2.1	16	94	0	57	30	6	9	54	1.56
136527--136574	21	2.3	21	85	0	60	25	39	12	22	1.89
136578--136668	21	4.3	20	91	4	119	18	36	25	19	1.95
137194--137290	33	2.9	34	84	3	124	55	3	3	38	1.31
137192--137297	34	3.2	33	78	8	115	54	3	2	38	1.33
140972--141047	30	2.7	29	87	6	111	28	13	7	50	1.69
144949--145035	37	2.3	38	79	15	108	45	0	3	50	1.18
145180--145217	20	1.9	20	94	0	67	21	21	10	47	1.80
146194--146238	20	2.5	17	80	19	56	24	22	11	42	1.86
153857--154010	76	2.0	76	87	2	220	34	16	19	29	1.94
158448--158506	22	2.7	22	74	10	57	38	1	3	55	1.26
162188--162260	21	3.1	23	75	20	71	65	4	1	28	1.19
162740--162816	27	2.8	26	79	15	75	38	2	2	55	1.27
163335--163404	36	1.9	36	100	0	140	42	22	8	25	1.82
166301--166365	32	2.0	32	96	0	121	32	27	9	30	1.88
166716--167454	193	3.7	196	88	6	1048	22	19	23	33	1.97
166887--167454	96	5.9	98	93	4	976	22	19	23	34	1.97

Tables:   1

The End!