Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002874.1 Hibiscus syriacus cultivar Beakdansim tig00005928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62274

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11399--11537
40
3.6
38
79
12
133
44
6
2
46
1.44
11488--11516
14
2.1
14
93
6
51
44
3
6
44
1.47
11519--11565
17
2.6
18
83
13
60
42
4
0
53
1.20
12616--12648
13
2.4
14
90
5
50
45
0
0
54
0.99
14422--14577
39
4.0
39
94
0
267
28
21
29
21
1.98
15182--15222
21
2.0
21
85
0
55
56
17
9
17
1.67
15379--15434
19
3.0
19
76
2
60
10
17
53
17
1.72
19568--19622
27
2.0
27
92
0
92
23
10
18
47
1.80
23181--23221
20
2.0
20
95
0
73
75
2
2
19
1.03
23391--23426
17
2.0
17
89
10
54
72
0
2
25
0.98
23488--23536
2
24.0
2
95
4
89
48
0
2
48
1.12
25230--25436
110
1.9
110
91
0
342
21
17
23
37
1.94
25784--25858
32
2.3
32
83
0
87
21
17
30
30
1.96
26697--26732
9
3.9
9
96
3
63
0
19
0
80
0.71
26678--26730
16
3.2
17
79
12
58
1
16
1
79
0.92
26673--26734
11
5.6
11
72
24
51
1
16
1
80
0.87
30046--30113
23
3.0
23
86
0
82
22
27
23
26
1.99
34435--34500
33
2.0
33
100
0
132
33
0
18
48
1.48
50812--50851
21
2.0
21
85
5
55
42
5
25
27
1.75
52877--52924
25
1.9
25
87
8
71
47
0
4
47
1.21
52985--53035
23
2.2
24
86
10
70
21
17
3
56
1.57
54709--54766
21
2.8
21
73
17
57
63
8
3
24
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56012--56051
16
2.5
16
84
8
55
50
0
2
47
1.14
56280--56315
18
2.0
18
94
0
63
25
2
27
44
1.68
56320--56725
113
3.6
113
94
0
677
30
16
13
39
1.87
58275--58310
14
2.6
14
90
0
54
5
16
0
77
0.94

Tables:   1

The End!