genome.fa.s2897.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002897.1 Hibiscus syriacus cultivar Beakdansim tig00005986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131174

Tables:   1   2   

This is table  1  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4336--4372	17	2.2	17	90	0	56	32	5	16	45	1.70
7607--7638	16	1.9	17	93	6	57	53	0	0	46	1.00
7892--7936	18	2.6	17	86	6	65	35	6	28	28	1.83
8512--9058	268	2.1	255	89	7	810	37	29	11	21	1.89
8736--8828	38	2.5	38	92	1	152	39	39	10	9	1.73
11234--11303	31	2.3	31	77	5	79	35	17	1	45	1.57
18007--18067	28	2.2	27	75	13	63	37	1	1	59	1.17
21433--21467	2	17.5	2	100	0	70	51	0	0	48	1.00
22450--22494	2	22.5	2	100	0	90	48	0	0	51	1.00
22859--22912	20	2.7	20	91	0	81	51	20	18	9	1.73
22950--23014	20	3.2	20	82	0	85	36	16	23	23	1.94
23055--23099	6	7.5	6	100	0	90	33	51	15	0	1.44
23784--23826	6	7.5	6	97	2	72	0	16	53	30	1.43
23916--24046	20	6.4	20	81	5	145	22	24	16	35	1.95
23916--24046	40	3.2	40	84	6	181	22	24	16	35	1.95
23927--24067	43	3.4	42	83	5	187	22	24	17	35	1.95
23914--24171	20	12.6	20	74	9	126	19	22	19	39	1.93
24121--24171	19	2.6	20	90	3	77	15	17	23	43	1.88
24957--25010	27	2.0	27	100	0	108	40	29	18	11	1.85
35778--35811	2	17.0	2	90	0	50	52	2	0	44	1.16
36098--36149	21	2.5	21	81	3	61	38	19	25	17	1.93
36708--36774	19	3.5	19	85	2	89	47	25	16	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36770--36935	20	9.1	19	74	16	136	12	22	22	42	1.87
36823--36910	33	2.6	33	92	1	140	11	25	25	38	1.89
38991--39057	21	3.2	21	66	6	55	23	35	20	19	1.95
38935--39057	42	2.9	42	80	4	106	22	35	17	23	1.95
40416--40451	14	2.6	14	95	0	63	30	0	25	44	1.54
40630--40780	19	8.7	19	63	21	71	15	22	19	41	1.90
40634--40757	33	3.8	32	87	8	187	14	23	19	42	1.88
40627--40757	66	2.0	66	96	0	244	16	22	19	41	1.89
43053--43077	12	2.1	12	100	0	50	0	28	0	72	0.86
43252--43305	24	2.2	24	90	0	81	38	20	16	24	1.92
44425--44498	19	4.5	16	83	16	66	13	20	18	47	1.82
44421--44488	19	3.8	19	87	12	101	13	22	17	47	1.82
44402--44516	52	2.2	52	84	0	140	20	21	20	38	1.94
44605--44641	14	2.6	14	86	0	56	48	21	0	29	1.50
46529--46586	14	3.4	18	71	24	54	46	22	18	12	1.82
46545--46602	14	3.9	14	79	16	71	48	25	17	8	1.75
46529--46607	32	2.4	33	95	2	142	46	24	18	10	1.80
46614--46695	19	4.6	19	76	17	95	17	20	18	43	1.88
46660--46723	19	3.3	19	86	2	83	17	23	18	40	1.91
46680--46723	20	2.2	20	88	4	63	18	25	20	36	1.95
47210--47254	18	2.5	18	92	0	81	13	13	44	28	1.81
48574--48611	20	1.9	20	88	0	58	50	21	15	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48875--48918	22	2.0	22	95	0	79	18	15	45	20	1.85
49103--49155	20	2.7	20	87	0	79	26	18	26	28	1.98
49123--49200	41	1.9	41	86	5	113	24	16	19	39	1.91
49186--49278	20	4.5	21	75	4	91	17	23	18	40	1.90
49186--49278	41	2.3	41	98	0	177	17	23	18	40	1.90
50180--50231	9	6.1	9	76	13	56	32	1	1	63	1.16
50168--50228	17	3.8	17	87	8	76	31	1	3	63	1.20
50168--50228	33	1.9	31	83	6	77	31	1	3	63	1.20
50188--50233	16	2.9	16	87	6	58	30	2	2	65	1.16
53996--54039	21	2.0	22	91	4	72	40	4	6	47	1.50
55115--55237	21	6.0	20	69	16	56	31	21	18	28	1.97
55126--55178	21	2.5	21	81	6	72	20	26	18	33	1.96
55168--55219	21	2.5	20	90	3	77	40	17	21	21	1.91
55229--55291	21	3.0	21	76	4	56	22	17	15	44	1.86
55293--55384	20	4.5	21	72	6	73	43	16	18	21	1.88
55586--55723	41	3.4	41	87	2	197	17	21	24	36	1.94
55608--55767	20	7.9	20	77	8	146	16	21	22	39	1.92
55733--55779	19	2.5	19	96	0	85	19	19	19	42	1.89
55608--55767	81	2.0	80	82	7	198	16	21	22	39	1.92
55767--55792	13	2.0	13	100	0	52	30	15	23	30	1.95
56492--56548	22	2.6	22	94	0	96	42	28	12	17	1.85
56539--56586	19	2.5	19	93	0	78	45	18	16	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56599--56650	20	2.6	20	96	0	95	42	21	25	11	1.86
57345--57389	19	2.4	19	92	0	72	46	26	17	8	1.78
57385--57502	19	6.7	20	74	20	88	10	22	22	45	1.81
57427--57548	14	7.6	14	70	24	82	10	24	22	42	1.85
57409--57597	33	5.5	33	88	7	263	11	22	20	45	1.83
58880--58947	21	3.2	21	64	15	59	29	39	13	17	1.88
58872--58968	42	2.3	42	100	0	194	30	38	14	16	1.89
58901--58968	21	3.2	21	64	15	59	30	39	13	16	1.86
59670--59736	21	3.2	21	66	6	55	23	35	20	19	1.95
59643--59736	42	2.2	42	81	7	102	22	35	21	21	1.96
61088--61123	14	2.6	14	95	0	63	30	0	25	44	1.54
61164--61223	27	2.2	27	96	0	111	26	0	23	50	1.50
61257--61315	19	3.4	19	73	22	74	45	18	22	13	1.84
61257--61349	33	2.8	33	91	3	143	46	22	19	11	1.82
61289--61365	19	4.3	19	78	18	76	46	24	15	12	1.81
61365--61491	33	3.8	33	93	0	209	12	22	18	46	1.83
61400--61491	19	5.4	18	71	24	83	14	20	18	46	1.83
61386--61473	14	5.6	14	69	23	50	12	22	19	45	1.84
64005--64058	24	2.2	24	90	0	81	40	20	16	22	1.91
64778--64829	20	2.6	20	81	0	77	36	21	19	23	1.95
65043--65096	20	2.7	20	94	0	90	38	22	24	14	1.91
65116--65164	19	2.6	19	96	0	89	16	20	14	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66745--66836	42	2.2	42	88	1	141	20	15	42	21	1.89
66772--66832	21	2.9	21	73	9	70	21	13	42	22	1.87
67174--67246	20	3.7	20	90	0	74	34	27	16	21	1.95
67180--67265	40	2.2	40	85	4	111	34	26	20	17	1.95
67200--67286	20	4.4	20	88	1	122	36	24	24	14	1.93
67312--67404	19	5.4	18	70	23	76	11	18	21	48	1.80
67334--67392	14	3.9	14	76	20	64	10	15	23	50	1.74
67317--67404	33	2.7	33	94	0	158	11	17	21	50	1.77
67381--67436	20	2.9	19	75	2	58	16	21	21	41	1.90
67970--68017	18	2.7	18	93	0	87	14	12	45	27	1.81
69337--69393	20	2.8	20	86	0	69	45	21	17	15	1.85
69660--69725	22	3.0	22	90	0	105	19	15	43	21	1.87
69898--70029	41	3.2	41	80	2	158	23	14	25	37	1.92
69919--70025	20	5.3	20	81	6	108	24	14	28	32	1.95
70015--70066	20	2.5	20	84	3	59	19	23	19	38	1.93
69912--70047	41	3.3	41	79	7	125	24	16	24	34	1.95
72054--72115	27	2.3	27	86	5	81	20	6	24	48	1.73
74226--74293	20	3.4	20	95	0	118	39	23	17	19	1.92
74211--74293	40	2.1	39	86	6	114	42	22	16	18	1.89
75259--75298	20	2.0	20	95	0	71	22	20	20	37	1.94
75306--75355	20	2.5	20	96	0	91	12	12	26	50	1.74
75531--75617	39	2.2	39	95	0	156	16	16	20	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75926--75962	18	2.1	18	89	0	56	51	10	8	29	1.65
76339--76387	25	2.0	25	87	0	71	44	20	8	26	1.79
76448--76489	20	2.1	20	95	0	75	42	16	23	16	1.88
76498--76559	20	3.1	20	88	0	97	33	24	20	20	1.97
79177--79230	24	2.2	24	93	0	90	40	20	18	20	1.91
79177--79244	24	2.8	24	84	0	64	38	20	17	23	1.93
84316--84381	14	4.7	14	66	7	53	43	0	4	51	1.22
84607--84634	10	2.8	10	100	0	56	28	50	21	0	1.49
85229--85254	13	2.0	13	100	0	52	46	15	0	38	1.46
87503--87536	17	1.9	18	94	5	61	29	0	14	55	1.40

Tables:   1   2