genome.fa.s2900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002900.1 Hibiscus syriacus cultivar Beakdansim tig00005991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258366

Tables:   1   2   

This is table  1  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065--1148	20	4.2	19	73	18	62	22	30	28	17	1.97
6080--6128	23	2.1	23	84	0	62	22	16	4	57	1.56
10664--10697	3	11.3	3	87	12	52	29	0	0	70	0.87
11231--11257	14	1.9	14	100	0	54	74	14	11	0	1.08
18053--18375	104	3.2	101	76	14	299	32	16	10	40	1.83
18332--18469	36	3.8	36	83	3	154	33	19	12	34	1.89
18507--18565	31	1.9	30	86	10	84	32	11	15	40	1.83
18537--18716	99	1.8	100	85	6	258	31	12	13	42	1.82
18631--18808	64	2.7	65	82	4	216	30	9	15	44	1.78
18816--18969	29	5.1	29	81	11	105	29	14	14	42	1.85
18833--18895	33	1.9	33	87	6	92	30	17	12	39	1.87
18866--19007	29	5.0	29	83	5	164	28	10	15	45	1.80
19038--19095	30	2.0	30	89	3	91	29	12	12	46	1.77
18950--19174	91	2.5	88	80	14	264	28	12	14	45	1.80
19287--19366	29	2.8	29	94	0	133	21	12	16	50	1.78
19386--19461	40	1.9	39	94	2	134	21	38	17	23	1.93
19520--19595	40	1.9	39	86	2	107	23	34	15	26	1.95
19380--19734	134	2.6	134	90	0	539	26	30	17	25	1.98
23289--23389	43	2.3	44	79	3	116	31	21	22	23	1.98
24695--25200	253	2.0	252	97	0	949	43	15	11	29	1.82
26610--26650	21	2.0	21	95	0	73	24	7	43	24	1.79
26740--26932	41	4.7	41	80	1	188	40	14	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26740--26932	82	2.3	83	81	4	230	40	14	17	27	1.89
32424--32452	3	10.0	3	92	7	51	34	0	0	65	0.93
33124--33158	17	2.1	17	100	0	70	31	40	0	28	1.57
33258--33303	20	2.3	20	79	20	53	41	43	0	15	1.46
36524--36563	20	2.0	21	90	5	64	40	27	2	30	1.70
36654--36819	73	2.3	73	81	5	183	34	12	5	46	1.65
36908--36963	18	3.3	18	68	27	59	26	10	0	62	1.28
36901--36966	32	2.1	32	100	0	132	27	12	0	60	1.32
37240--37963	264	2.7	262	85	3	916	33	14	11	40	1.82
40527--40635	31	3.5	31	92	0	173	19	17	21	42	1.90
40527--40651	62	2.0	62	87	3	180	20	16	21	40	1.91
42569--42620	12	4.3	12	80	9	70	21	0	53	25	1.45
44104--44157	27	2.0	27	100	0	108	33	11	33	22	1.89
53289--53329	20	2.0	21	85	4	57	36	2	2	58	1.24
55586--55636	23	2.2	24	83	10	63	19	11	3	64	1.41
60393--61325	83	11.2	83	94	2	1498	26	14	23	35	1.93
63822--63876	22	2.5	22	90	0	92	34	12	14	38	1.84
64279--65061	113	7.0	113	92	2	1184	38	13	18	29	1.90
65467--65801	76	4.4	76	95	0	589	22	20	21	35	1.96
65931--65971	3	14.0	3	80	14	50	36	0	0	63	0.95
67349--67389	20	2.0	21	85	4	57	36	2	2	58	1.24
69519--69555	18	2.1	18	89	0	56	45	10	27	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75227--75285	22	2.7	22	97	0	109	3	37	0	59	1.14
82085--82134	26	1.9	26	84	8	66	32	16	10	42	1.81
86625--86681	25	2.3	25	78	0	60	29	22	19	28	1.98
89059--89104	24	1.9	24	100	0	92	23	8	15	52	1.70
89235--89309	35	2.2	34	90	2	114	34	21	4	40	1.72
96581--96645	32	2.1	32	94	5	116	36	7	3	52	1.46
96810--96869	25	2.5	24	83	8	77	56	1	3	38	1.26
99747--99824	15	4.9	15	67	22	52	70	2	8	17	1.25
99882--99937	15	3.6	15	78	4	58	66	3	5	25	1.29
99873--99953	30	2.9	28	79	16	87	66	3	4	24	1.28
99918--99984	27	2.4	27	76	13	66	64	5	5	23	1.39
100056--100143	32	2.8	32	80	13	85	59	1	5	34	1.29
102063--102094	3	10.7	3	100	0	64	68	0	0	31	0.90
102230--102262	17	1.9	17	93	0	57	60	3	3	33	1.27
102797--102908	37	3.0	37	92	0	179	34	12	12	40	1.81
104052--104590	110	4.9	110	93	0	889	24	18	23	34	1.96
108264--108318	25	2.2	25	84	12	69	72	0	12	14	1.12
108260--108320	26	2.3	26	76	18	65	73	0	11	14	1.09
108523--108570	21	2.2	23	78	14	57	60	0	18	20	1.36
108694--108730	17	2.0	20	85	15	53	75	0	5	18	0.99
109027--109102	22	3.5	22	78	10	102	22	11	15	50	1.77
109098--109168	37	1.9	37	91	0	115	35	9	12	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114521--114546	13	2.0	13	100	0	52	30	23	15	30	1.95
115347--115380	16	2.2	16	89	5	52	20	0	0	79	0.73
115594--115626	2	16.5	2	100	0	66	51	0	0	48	1.00
116872--117104	20	11.5	20	72	11	118	38	24	17	19	1.93
116890--117104	41	5.3	41	82	5	215	38	24	17	19	1.93
116913--117104	40	4.7	41	85	1	253	39	24	17	19	1.92
117664--117754	20	4.6	20	84	9	123	51	20	16	10	1.74
117664--117758	40	2.4	40	85	7	140	51	20	17	10	1.74
117784--117867	33	2.5	33	86	0	114	15	22	16	45	1.85
118641--119020	94	4.1	94	95	1	647	21	12	18	47	1.82
119068--119154	19	4.4	19	81	7	102	44	22	18	13	1.85
119068--119183	19	6.2	18	73	21	80	44	24	17	13	1.85
119180--119276	19	5.6	18	69	22	75	10	22	20	46	1.81
119185--119276	33	2.8	33	96	0	166	10	21	20	46	1.81
119753--119819	21	3.2	21	66	6	55	23	35	20	19	1.95
119701--119819	42	2.8	42	81	5	107	22	36	18	22	1.95
121289--121339	14	3.1	17	72	21	54	45	17	23	13	1.84
121289--121368	33	2.4	33	91	0	124	46	20	21	12	1.83
121289--121347	19	3.4	19	73	22	74	45	18	22	13	1.84
121374--121524	19	8.7	19	70	21	125	13	23	19	44	1.85
121450--121510	14	4.0	14	73	19	59	13	22	19	44	1.85
121374--121491	53	2.2	52	87	1	164	13	22	19	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121432--121524	33	2.8	33	90	1	132	13	22	20	43	1.87
124796--125034	20	11.9	20	79	8	216	19	18	24	37	1.94
143588--143633	23	2.0	23	83	8	58	15	17	23	43	1.87
143429--143643	113	1.9	113	98	0	412	23	21	21	32	1.98
150459--150524	33	2.0	33	96	0	123	46	22	18	12	1.81
151372--151421	21	2.4	21	93	0	82	18	26	36	20	1.95
164120--164223	20	5.2	20	91	0	154	38	22	16	23	1.93
164214--164259	20	2.3	20	92	0	74	41	23	15	19	1.89
164113--164243	60	2.2	59	80	4	154	40	22	14	22	1.90
164397--164468	22	3.3	22	84	0	90	23	37	12	26	1.90
164828--164873	19	2.3	20	85	3	58	30	34	15	19	1.93
164884--164946	21	3.1	21	81	4	76	19	20	14	46	1.84
167043--167106	21	3.0	22	79	9	78	20	35	18	25	1.95
168456--168604	64	2.3	64	94	0	253	28	2	17	51	1.56
168666--168787	20	6.1	20	83	3	138	40	20	18	20	1.92
168671--168794	40	3.1	40	80	4	160	38	19	20	21	1.93
168666--168787	60	2.0	60	83	0	154	40	20	18	20	1.92
171507--171540	12	2.8	12	90	0	50	14	0	29	55	1.40
172393--172432	21	2.0	21	90	5	64	37	10	22	30	1.87
195519--195553	15	2.5	14	86	13	54	37	20	20	22	1.95
198676--198789	21	5.4	21	70	15	92	21	19	21	36	1.95
198671--198793	42	2.9	42	96	0	228	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198882--198908	6	4.5	6	100	0	54	33	51	14	0	1.43
199508--199561	21	2.6	21	96	0	99	20	20	29	29	1.98
206435--206468	17	2.1	17	88	5	52	58	5	0	35	1.22
206876--207007	57	2.3	57	100	0	264	28	21	34	15	1.93
208684--208753	4	16.8	4	72	19	54	24	4	2	68	1.21
208828--208965	18	7.8	17	70	20	61	18	5	1	73	1.10
208827--208910	15	5.4	15	74	20	57	14	5	1	78	0.99
208839--208910	28	2.7	27	81	10	85	12	6	0	80	0.89
208864--208977	9	12.2	9	78	14	65	21	5	0	71	1.11
208843--208979	6	21.0	6	79	18	55	21	5	0	72	1.08

Tables:   1   2