genome.fa.s2917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002917.1 Hibiscus syriacus cultivar Beakdansim tig00006030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  263168

Tables:   1   2   

This is table  1  of  2  ( 206 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4871--4923	21	2.4	21	78	6	61	52	22	9	15	1.70
5582--5653	35	2.1	35	91	0	117	43	26	0	30	1.55
6585--6660	32	2.3	34	86	4	111	30	2	22	44	1.66
11832--11877	15	3.1	15	80	0	56	58	2	2	36	1.22
16129--16172	22	2.0	22	95	0	79	25	38	13	22	1.91
20069--20115	21	2.1	21	88	7	67	68	2	23	6	1.24
20079--20120	21	2.0	20	90	9	66	69	0	23	7	1.13
20075--20115	21	1.9	22	95	5	75	68	0	24	7	1.15
20050--20139	19	4.7	18	74	10	72	68	3	22	5	1.25
22237--22523	58	5.1	58	75	10	254	33	8	18	39	1.81
22238--22464	111	2.0	110	87	5	323	31	9	18	39	1.84
22818--22917	42	2.4	42	78	5	105	26	19	22	33	1.97
23040--23144	41	2.5	42	72	13	101	27	19	21	31	1.97
22743--23232	228	2.2	227	85	3	592	28	23	17	31	1.97
24645--24695	20	2.6	20	90	3	77	37	3	19	39	1.70
24754--24815	19	3.2	19	93	4	97	32	22	16	29	1.95
26744--26818	29	2.6	29	97	2	143	28	14	12	45	1.80
30616--30644	14	2.1	14	100	0	58	20	0	6	72	1.07
36963--37031	2	34.5	2	100	0	138	49	0	0	50	1.00
37103--37142	21	2.0	20	85	5	53	37	22	2	37	1.68
38860--38919	21	2.9	21	100	0	120	20	28	23	28	1.99
39601--39713	21	5.4	21	98	0	217	29	23	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40169--40326	21	7.8	20	72	7	86	38	25	17	18	1.92
40332--40542	40	5.3	40	90	1	282	36	24	18	20	1.95
40293--40542	20	12.5	20	84	3	252	38	24	18	19	1.93
41225--41271	24	2.0	24	87	8	69	25	14	21	38	1.92
41446--41470	12	2.1	12	100	0	50	72	0	28	0	0.86
43805--43954	19	8.4	19	82	14	203	14	22	17	46	1.84
43786--43954	52	3.2	52	99	0	329	13	23	17	44	1.84
43786--43936	33	4.4	33	72	18	146	13	23	17	45	1.84
44031--44085	14	3.6	14	73	21	56	45	20	23	10	1.82
44013--44104	33	2.8	33	98	1	175	44	18	23	13	1.85
44045--44161	52	2.2	52	95	0	207	44	17	21	16	1.87
44168--44267	19	5.5	19	84	12	147	15	23	17	45	1.85
44151--44267	53	2.2	53	95	1	209	14	24	17	43	1.86
44374--44410	14	2.6	14	91	0	65	45	21	0	32	1.52
46391--46447	14	3.7	14	77	20	60	45	22	21	10	1.82
46372--46464	33	2.8	33	95	0	168	47	21	20	10	1.80
46335--46469	19	7.6	19	76	16	128	45	23	19	11	1.82
46465--46593	19	7.3	18	72	17	94	10	17	25	46	1.79
46481--46537	14	3.7	14	77	20	60	10	21	22	45	1.82
46465--46556	33	2.8	33	91	0	148	9	19	23	46	1.80
46637--47481	93	9.1	93	99	0	1656	45	19	12	22	1.83
49056--49105	24	2.1	25	82	10	61	52	18	10	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49178--49249	19	4.1	19	75	17	73	43	20	26	9	1.83
49183--49275	33	2.8	33	91	0	150	43	22	24	9	1.83
49202--49258	14	3.7	14	75	20	60	40	24	26	8	1.84
49175--49280	19	6.1	19	69	20	70	43	20	25	10	1.84
49292--49348	14	3.7	14	75	20	60	8	24	22	43	1.81
49276--49407	33	3.7	34	80	14	133	10	23	21	43	1.84
49332--49407	20	3.8	20	85	3	107	13	25	18	43	1.86
49332--49408	41	1.9	40	91	2	127	12	25	18	42	1.86
49487--49557	33	2.2	33	89	0	106	47	16	23	11	1.79
49736--49790	22	2.5	22	81	0	74	20	16	40	23	1.91
49913--49994	40	2.1	40	81	6	96	23	15	23	37	1.93
49936--50128	20	9.6	20	83	3	219	19	20	25	35	1.96
50115--50197	21	4.0	21	73	6	78	25	16	24	33	1.96
50095--50193	42	2.4	43	77	11	100	21	18	23	37	1.94
57063--57108	23	2.0	23	84	12	60	69	4	0	26	1.07
57416--57445	15	1.9	16	93	6	53	13	3	0	83	0.77
58281--58307	12	2.2	12	100	0	54	7	0	14	77	0.97
60165--60206	18	2.3	18	84	8	50	38	2	2	57	1.25
71042--71071	15	2.0	15	93	0	51	23	6	0	70	1.11
71187--71237	14	3.5	15	81	10	61	66	5	0	27	1.14
71429--71517	3	29.7	3	93	0	151	33	1	0	65	1.00
72893--72946	21	2.5	22	82	8	58	20	0	11	68	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73611--73635	7	3.6	7	100	0	50	68	0	0	32	0.90
77044--77076	15	2.3	15	89	5	50	48	0	3	48	1.17
84346--84423	9	8.3	9	76	17	70	79	0	16	3	0.87
84334--84423	27	3.5	27	85	8	116	80	0	16	3	0.85
84335--84424	34	2.6	36	79	13	107	78	0	17	3	0.88
84334--84392	7	8.3	7	78	10	66	81	0	16	1	0.78
84339--84424	43	2.0	43	84	13	115	79	0	17	3	0.88
85460--85670	82	2.6	82	97	0	395	27	12	22	37	1.90
86518--87071	113	4.9	113	94	1	932	38	13	18	29	1.90
87390--87478	3	29.7	3	93	0	142	32	3	0	64	1.10
93716--94046	165	2.0	165	96	0	608	31	7	20	40	1.80
98840--98930	40	2.4	39	83	9	107	37	12	16	34	1.86
98854--98950	40	2.3	40	81	8	106	43	13	12	30	1.81
99754--99841	27	3.1	27	73	23	81	37	15	11	35	1.84
99779--99853	32	2.3	32	88	4	107	36	18	9	36	1.83
100737--100784	20	2.4	20	92	0	78	50	22	16	10	1.76
100994--101093	23	4.2	23	73	12	94	27	8	14	51	1.69
102602--102643	21	2.0	21	81	9	50	21	7	38	33	1.81
102993--103111	42	2.8	42	88	0	166	21	35	20	22	1.96
102997--103111	21	5.5	21	78	4	115	21	35	20	21	1.96
105059--105094	16	2.2	16	90	0	54	19	0	13	66	1.24
105141--105199	20	3.0	20	92	0	100	45	23	18	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105205--105242	20	1.9	20	100	0	76	13	15	21	50	1.78
105203--105248	20	2.3	20	88	0	74	13	17	23	45	1.83
105718--105753	18	2.0	18	94	0	63	16	2	25	55	1.55
108037--108088	24	2.2	24	82	0	59	36	21	19	23	1.95
108195--108233	12	3.2	12	92	3	60	12	0	28	58	1.34
108825--108855	16	1.9	16	93	0	53	67	0	3	29	1.06
109047--109084	20	1.9	20	88	0	58	36	15	21	26	1.93
109022--109106	40	2.1	40	82	4	100	37	11	18	31	1.87
109158--109268	20	5.5	20	76	12	102	23	18	18	40	1.91
116785--116841	15	3.8	15	77	15	64	47	1	0	50	1.11
116788--116829	14	2.9	14	76	16	50	45	2	0	52	1.13
118800--118837	20	1.9	20	88	0	58	21	26	10	42	1.85
119131--119193	28	2.2	28	83	13	76	49	15	9	25	1.75
120880--120918	4	9.8	4	100	0	78	74	0	0	25	0.82
129508--129985	182	2.6	182	91	0	751	42	14	16	26	1.86
130499--130847	180	1.9	182	91	1	576	41	14	16	27	1.87
131482--131644	87	1.9	87	92	2	274	33	13	11	41	1.80
131565--131616	23	2.3	23	79	0	59	38	13	5	42	1.68
135460--135546	35	2.5	34	80	12	97	55	10	8	26	1.61
136106--136179	37	2.0	36	82	7	87	66	1	9	22	1.29
136136--136173	20	1.9	20	88	0	58	63	2	7	26	1.35
137518--138674	106	11.0	106	90	2	1809	22	18	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138675--138812	37	3.8	36	82	6	154	39	14	20	26	1.91
139559--139633	22	3.4	22	86	0	114	24	10	24	41	1.86
140236--140283	19	2.6	18	83	6	60	2	12	6	79	1.01
140257--140291	16	2.2	16	90	10	54	0	14	5	80	0.89
143395--143479	37	2.3	36	80	8	91	67	1	9	22	1.27
143425--143462	20	1.9	20	88	0	58	63	2	7	26	1.35
145100--145632	267	2.0	267	96	0	976	37	23	10	28	1.89
146466--146687	111	2.0	111	96	0	408	45	10	7	36	1.67
146751--146789	18	2.2	18	90	4	62	66	2	0	30	1.05
146973--147098	50	2.5	49	79	5	153	22	29	32	15	1.95

Tables:   1   2