genome.fa.s2930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002930.1 Hibiscus syriacus cultivar Beakdansim tig00006055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59326

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3934--4016	24	3.4	23	72	16	60	42	0	7	50	1.30
3999--4065	34	1.9	36	87	6	102	41	0	4	53	1.21
3990--4070	34	2.4	32	80	13	90	43	0	3	53	1.18
6239--6284	17	2.7	17	82	0	56	41	2	2	54	1.25
6468--6521	27	2.0	27	100	0	108	51	22	3	22	1.63
9329--9378	6	8.3	6	100	0	100	18	0	48	34	1.48
13020--13053	6	5.5	6	89	3	50	41	0	0	58	0.98
13018--13053	18	1.9	19	94	5	65	41	0	0	58	0.98
13809--13857	20	2.5	19	77	9	53	24	2	8	65	1.31
14784--14843	15	4.0	15	87	8	86	51	1	0	46	1.10
14784--14843	30	2.0	30	93	0	102	51	1	0	46	1.10
14865--14912	22	2.4	18	73	23	51	33	0	14	52	1.42
14831--15572	54	13.2	54	68	23	353	33	0	13	53	1.40
14921--15460	32	17.7	32	76	16	415	33	0	12	53	1.39
14954--14996	22	2.0	22	100	0	86	34	0	13	51	1.42
14985--15038	14	3.6	14	72	18	54	35	0	5	59	1.21
15124--15166	22	2.0	22	95	0	77	37	0	11	51	1.39
15199--15258	18	3.6	18	71	17	65	31	0	11	56	1.35
15178--15428	80	3.0	83	87	9	366	33	0	13	53	1.40
14976--15540	198	2.8	198	96	1	1031	33	0	13	53	1.39
15322--15364	22	2.0	22	100	0	86	34	0	13	51	1.42
15413--15474	18	3.7	17	73	18	58	35	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15487--15582	32	3.0	32	93	0	174	32	0	12	55	1.37
15597--15655	31	1.9	31	89	0	91	44	10	5	40	1.60
18931--19406	252	1.9	252	94	0	844	24	15	23	36	1.94
30512--30554	20	2.1	21	91	4	70	37	11	0	51	1.39
31046--31071	6	4.3	6	100	0	52	84	0	0	15	0.62
43971--44515	252	2.2	245	86	11	768	27	11	19	41	1.86
44885--44931	18	2.7	18	86	3	69	27	29	8	34	1.87

Tables:   1

The End!