genome.fa.s2935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002935.1 Hibiscus syriacus cultivar Beakdansim tig00006063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76387

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5835--5995	81	2.0	80	97	1	304	44	9	20	24	1.82
7335--7373	6	6.8	6	88	11	64	30	17	15	35	1.91
7337--7368	16	2.0	16	100	0	64	25	18	18	37	1.94
9891--9929	14	2.8	14	88	7	53	10	12	17	58	1.61
9854--9919	24	2.8	24	88	0	96	9	16	22	51	1.72
11010--11068	16	3.7	16	93	0	100	8	11	23	55	1.63
11131--11174	15	3.1	14	87	6	61	9	6	18	65	1.42
14168--14200	16	2.1	16	100	0	66	57	6	24	12	1.57
14517--14549	17	1.9	17	93	0	57	0	36	12	51	1.39
15692--15786	32	3.2	31	74	22	96	25	38	2	33	1.68
15703--15786	25	3.1	25	78	18	87	25	39	2	33	1.69
22327--22367	21	2.0	21	85	0	55	43	21	12	21	1.85
23660--23967	73	4.2	71	78	15	315	43	2	8	45	1.49
23660--23969	38	8.3	38	82	11	306	43	2	8	45	1.49
23660--23969	75	4.2	75	78	13	306	43	2	8	45	1.49
23917--24014	45	2.2	45	87	8	146	46	3	6	43	1.43
23961--24032	38	1.9	37	80	2	81	43	2	8	45	1.48
24177--24546	43	8.6	41	78	9	321	34	19	21	24	1.96
24217--24546	85	3.9	81	78	11	306	33	19	20	25	1.97
24197--24546	127	2.7	126	82	4	407	34	20	20	24	1.96
25062--25116	20	2.8	20	86	10	85	54	5	9	30	1.54
28049--28271	41	5.4	41	83	3	277	36	17	18	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28029--28307	124	2.2	124	84	3	357	35	17	18	28	1.93
28029--28356	124	2.6	124	79	8	319	35	17	18	28	1.94
28467--28509	17	2.5	18	88	7	63	20	0	0	79	0.74
29583--29629	24	1.9	25	82	4	60	19	10	2	68	1.30
29652--29721	4	18.0	4	72	16	58	24	1	1	72	1.00
29750--29774	12	2.1	12	100	0	50	16	0	8	76	1.02
30508--30556	21	2.3	21	82	0	62	24	22	16	36	1.94
30546--30622	20	3.8	21	84	10	106	36	20	19	23	1.95
31184--31262	33	2.4	33	84	0	104	49	18	20	11	1.78
31260--31332	19	4.1	19	77	16	84	12	21	17	47	1.80
33025--33400	94	4.1	93	91	3	589	21	11	18	48	1.80
33491--33567	19	4.0	19	88	3	109	48	19	23	9	1.77
33491--33626	20	7.3	19	82	12	138	49	22	19	8	1.75
33496--33625	33	3.5	36	80	13	122	49	23	20	7	1.74
33631--33682	20	2.7	20	84	3	79	13	23	21	42	1.88
33631--33706	39	1.9	39	84	7	100	14	19	19	46	1.84
35348--35383	14	2.6	14	90	0	54	33	2	22	41	1.68
35490--35620	19	7.8	17	67	23	64	45	18	24	12	1.83
35508--35595	14	5.6	14	67	23	50	44	18	25	12	1.84
35490--35616	33	3.8	33	95	0	227	44	18	24	12	1.84
35626--35711	19	4.7	19	72	15	74	11	20	24	43	1.85
35664--35718	20	2.8	19	83	2	65	18	21	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35685--35757	20	3.6	20	70	17	60	23	17	24	34	1.96
39153--39268	41	2.8	41	100	0	232	38	18	21	21	1.93
39142--39273	61	2.2	61	89	5	196	36	18	21	24	1.95
39141--39432	21	14.0	21	80	8	240	29	18	19	32	1.95
39272--39420	60	2.4	62	91	4	239	22	19	17	40	1.91
39272--39422	81	1.9	81	94	0	266	22	19	17	40	1.91
39141--39421	41	6.7	42	80	8	209	29	18	18	33	1.95
39405--39460	21	2.7	20	81	8	67	33	17	25	23	1.96
40509--40553	23	2.0	23	82	8	56	28	13	0	57	1.36
50968--50998	15	2.1	15	93	0	53	54	0	0	45	0.99
58106--58137	6	5.3	6	96	0	55	18	0	81	0	0.70
62613--62671	28	2.1	28	90	0	91	57	6	10	25	1.56
62715--62742	14	2.0	14	100	0	56	7	28	7	57	1.52
63673--63712	10	4.2	10	76	23	50	20	7	0	72	1.08
63757--63803	22	2.1	23	88	4	69	12	6	8	72	1.27
70132--70179	21	2.3	20	89	3	69	29	4	2	64	1.23
70144--70186	21	2.0	21	86	8	61	30	6	4	58	1.45
71542--71595	29	1.9	29	85	7	76	48	0	5	46	1.25

Tables:   1

The End!