genome.fa.s2942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002942.1 Hibiscus syriacus cultivar Beakdansim tig00006072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78856

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188--3227	16	2.6	16	85	14	50	37	0	0	62	0.95
3159--3228	32	2.3	31	82	5	79	35	0	1	62	1.04
5169--5208	2	20.0	2	100	0	80	50	0	0	50	1.00
5689--5725	16	2.3	16	90	9	58	27	0	5	67	1.12
6588--6656	36	1.9	36	90	0	111	40	18	11	28	1.86
7225--7265	7	6.0	7	83	13	50	17	17	9	56	1.67
13707--13916	73	2.9	74	90	4	329	30	19	11	39	1.87
13707--13888	37	5.0	36	70	6	152	32	18	10	39	1.84
13945--14428	122	3.9	122	86	5	634	41	15	17	25	1.88
14613--14647	12	2.9	12	84	16	54	22	0	0	77	0.78
14623--14721	3	33.7	3	76	8	96	33	1	1	64	1.07
15086--15119	17	1.9	18	88	5	52	55	11	23	8	1.63
15442--15501	29	2.1	29	96	0	111	25	21	15	38	1.92
15736--15782	2	23.5	2	100	0	94	48	0	0	51	1.00
16553--16596	23	1.9	23	85	0	61	52	2	0	45	1.13
16612--16650	17	2.3	18	82	13	55	35	2	0	61	1.10
16487--16745	139	1.8	141	83	4	344	44	7	5	43	1.55
24206--24246	21	2.0	21	90	0	64	21	0	4	73	1.02
24238--24268	10	3.1	10	90	0	53	19	0	6	74	1.03
33551--33578	8	3.5	8	100	0	56	39	0	10	50	1.37
37087--37262	18	9.9	17	71	21	105	75	0	15	8	1.03
37075--37257	25	7.2	25	75	16	164	75	0	16	7	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37087--37153	32	2.1	31	86	2	89	73	0	17	8	1.09
37075--37263	51	3.7	51	79	11	210	75	0	16	7	1.02
37135--37262	8	16.4	8	71	25	80	77	0	14	8	0.99
37075--37263	101	1.9	102	85	7	269	75	0	16	7	1.02
37074--37240	6	27.0	6	67	24	57	75	0	16	7	1.03
37131--37263	13	10.2	13	70	25	70	75	0	15	8	1.02
38532--38650	37	3.2	37	87	7	152	41	19	19	20	1.91
38666--39021	55	6.6	55	81	5	356	28	17	24	29	1.97
38673--38929	106	2.4	106	89	0	370	29	17	24	27	1.97
39222--39264	20	2.2	19	88	12	61	20	0	6	72	1.08
43602--43718	21	5.6	21	87	0	180	25	21	27	25	1.99
43603--43721	42	2.8	42	93	3	204	26	21	26	25	2.00
47984--48027	22	2.0	22	91	4	72	22	25	29	22	1.99
56351--56396	24	1.9	24	82	8	58	52	0	0	47	1.00
58166--58226	27	2.3	27	100	0	122	34	13	16	36	1.87
58818--58869	25	2.1	24	83	16	63	76	5	3	13	1.10
58821--58869	12	3.7	13	78	10	55	75	6	4	14	1.14
59276--59571	115	2.7	107	85	5	371	40	16	19	23	1.91
60202--60240	13	3.0	13	84	0	51	43	41	2	12	1.56
62066--62112	24	2.0	24	95	0	85	38	12	10	38	1.78
63643--63977	132	2.5	130	84	2	411	28	17	21	32	1.96
63880--64085	108	1.9	108	90	0	331	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64968--65072	52	2.0	52	87	7	149	44	17	8	29	1.78
65070--65199	42	3.1	41	76	5	127	32	23	19	25	1.97
65063--65794	264	2.8	263	86	2	1040	31	20	18	28	1.97
67145--67208	28	2.3	28	80	0	83	21	9	34	34	1.86
67209--67243	15	2.2	16	90	5	54	14	17	20	48	1.81
70677--70717	18	2.3	19	79	12	50	41	2	7	48	1.44
71585--71658	2	38.5	2	92	8	127	52	0	0	47	1.00
71838--71928	24	3.8	24	84	11	116	41	17	17	23	1.90
74386--74425	7	5.4	7	82	11	53	27	27	32	12	1.93
74377--74441	8	8.5	8	77	19	68	23	27	35	13	1.93
74377--74425	15	3.1	15	88	5	71	26	28	32	12	1.92
74436--74495	18	3.6	18	72	21	67	15	21	46	16	1.83
74415--74472	13	4.5	13	97	0	98	17	24	43	15	1.87
76044--76082	17	2.4	16	82	4	51	74	5	5	15	1.17
76438--76471	13	2.6	13	95	0	59	88	0	2	8	0.62
76512--76821	120	2.7	110	80	7	282	42	14	16	25	1.87
76869--76931	28	2.1	29	80	13	67	50	3	14	31	1.58

Tables:   1

The End!