Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002984.1 Hibiscus syriacus cultivar Beakdansim tig00006173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87108

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1498--1537
16
2.7
14
78
14
53
7
15
32
45
1.74
1486--1554
19
3.7
19
70
20
56
5
14
28
50
1.66
1696--1747
25
2.1
25
96
0
95
38
30
17
13
1.88
2637--2678
21
2.0
21
100
0
84
47
19
0
33
1.49
9075--9100
2
13.0
2
100
0
52
50
0
0
50
1.00
11234--11268
11
3.2
11
87
0
52
42
14
8
34
1.76
17691--17720
14
2.2
14
94
5
53
46
6
0
46
1.29
20239--20321
40
2.0
41
90
4
132
30
31
14
24
1.94
28900--29012
12
9.4
11
71
17
66
38
0
0
60
1.03
28914--29008
24
3.8
27
76
15
89
43
0
1
55
1.06
28909--29066
64
2.5
64
92
4
259
41
0
1
56
1.07
28961--29049
38
2.3
37
81
12
101
43
0
1
55
1.07
29061--29122
19
3.3
19
78
15
58
37
1
0
61
1.06
29583--29643
31
2.0
31
86
0
86
47
6
4
40
1.51
36822--36865
15
2.9
15
89
3
70
13
31
29
25
1.94
36902--36970
15
4.3
16
75
10
61
17
28
31
21
1.96
36914--36970
15
3.7
15
77
9
69
15
29
33
21
1.94
36902--36970
32
2.2
32
91
0
111
17
28
31
21
1.96
42587--42643
29
2.0
29
85
0
78
29
10
3
56
1.50
43507--43609
24
4.3
24
94
0
179
22
20
9
47
1.79
43507--43609
48
2.1
48
98
0
197
22
20
9
47
1.79
46277--46323
21
2.2
21
100
0
94
44
4
0
51
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46289--46349
26
2.3
26
88
5
88
42
3
1
52
1.27
46277--46355
21
3.5
21
79
15
77
40
3
1
54
1.26
47382--47703
161
2.0
161
100
0
644
30
23
19
26
1.98
49958--50025
21
3.2
21
95
0
127
44
2
0
52
1.16
49970--50051
26
3.3
26
83
11
95
42
2
1
53
1.21
49958--50073
21
5.4
21
81
11
101
43
2
0
53
1.20
50045--50087
11
3.4
14
79
20
51
51
0
0
48
1.00
51314--53903
868
3.0
869
99
0
5127
30
16
17
36
1.92
55885--56550
355
1.9
355
99
0
1305
30
13
16
40
1.86
63794--63828
13
2.7
13
100
0
70
14
25
28
31
1.95
65802--66457
334
2.0
333
92
0
1089
34
16
19
29
1.94
68856--68904
15
3.3
15
91
0
80
24
14
28
32
1.94
74543--74567
2
12.5
2
100
0
50
0
48
0
52
1.00

Tables:   1

The End!