genome.fa.s2990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002990.1 Hibiscus syriacus cultivar Beakdansim tig00006184_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115380

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6635--6664	15	2.0	15	100	0	60	40	26	0	33	1.57
17014--17046	2	17.0	2	93	6	59	48	0	0	51	1.00
17191--17230	20	2.0	20	86	13	57	45	0	7	47	1.31
17357--17388	2	16.0	2	100	0	64	50	0	0	50	1.00
17480--17542	14	4.4	14	76	15	58	69	1	4	23	1.16
17550--17628	33	2.4	34	89	6	117	63	5	7	24	1.41
17524--17584	26	2.4	26	78	5	72	63	4	8	22	1.41
20383--20432	26	2.0	25	84	11	66	16	16	6	62	1.52
21340--21800	47	10.0	47	85	2	562	30	19	20	29	1.97
21752--21954	76	2.7	76	91	0	307	35	18	19	27	1.95
21894--22005	45	2.5	46	91	2	165	30	16	22	30	1.96
21828--22128	121	2.5	121	86	1	424	33	18	21	26	1.97
21911--22005	45	2.1	45	96	0	172	32	17	23	26	1.97
22015--22195	45	4.0	45	88	1	254	30	20	24	24	1.98
22847--22898	22	2.4	22	96	0	95	34	15	13	36	1.87
23637--23699	27	2.3	27	94	0	117	53	12	15	17	1.72
26765--26807	15	2.9	16	86	13	65	0	18	0	81	0.69
26770--26807	11	3.5	11	86	13	60	0	18	0	81	0.69
32274--32329	2	28.5	2	96	3	105	50	0	0	50	1.00
32751--32789	14	2.8	14	92	7	62	61	2	7	28	1.37
32810--32877	33	2.1	33	91	5	111	61	2	13	22	1.45
33580--33604	12	2.1	12	100	0	50	60	16	8	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34377--34419	15	2.6	17	78	17	54	16	32	6	44	1.74
34609--34648	19	2.1	19	100	0	80	20	0	40	40	1.52
36241--36286	19	2.4	19	96	0	83	21	21	13	43	1.86
61090--61160	31	2.3	31	90	4	108	25	15	22	36	1.93
65287--65382	20	4.8	20	75	11	79	37	22	18	20	1.94
65349--65637	20	14.5	20	82	6	275	37	24	17	20	1.94
65349--65637	60	4.8	60	87	1	312	37	24	17	20	1.94
66489--66535	24	2.0	24	87	8	69	25	14	21	38	1.92
68938--69123	19	10.7	19	76	19	201	45	18	20	15	1.86
68938--69087	71	2.1	71	92	4	250	46	18	20	14	1.83
68924--69123	52	3.9	52	84	12	254	45	18	21	15	1.86
68924--69087	33	4.7	34	82	14	192	46	18	21	14	1.84
69113--69260	33	4.4	32	73	16	129	13	25	18	43	1.86
69132--69277	18	8.4	18	81	15	175	14	23	17	44	1.86
69113--69277	51	3.2	51	94	4	289	13	24	18	43	1.87
69132--69277	69	2.1	70	82	11	176	14	23	17	44	1.86
69383--69419	14	2.6	14	91	0	65	45	21	0	32	1.52
71335--71468	19	7.6	19	73	18	110	45	23	19	11	1.83
71372--71463	32	2.8	33	93	1	159	46	20	20	11	1.82
71464--71592	19	7.3	19	73	17	116	9	17	27	45	1.78
71464--71555	33	2.8	33	91	3	141	8	18	27	45	1.78
71640--72013	92	4.1	93	98	1	718	45	19	12	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73719--73808	14	5.7	14	72	23	72	43	23	24	8	1.82
73711--73825	33	3.5	33	97	0	221	46	20	23	9	1.80
73733--73830	19	5.7	19	71	22	90	43	22	23	10	1.83
73842--73898	14	3.7	14	75	20	60	8	24	22	43	1.81
73856--73944	19	4.9	19	72	15	80	11	23	21	43	1.84
73826--73944	33	3.4	33	88	6	157	10	22	22	44	1.82
74036--74106	33	2.2	33	92	0	115	47	18	22	11	1.80
74488--74621	20	6.7	20	83	6	164	18	17	27	35	1.94
74487--74621	40	3.3	40	82	5	182	18	17	27	36	1.94
74589--74643	21	2.7	20	88	2	74	10	18	25	45	1.82
74490--74640	81	1.9	81	87	2	223	18	17	26	37	1.93
74608--74746	21	6.7	21	72	5	86	20	17	25	37	1.93
74608--74707	42	2.4	44	77	9	102	21	18	23	38	1.94
74846--74879	2	17.5	2	93	6	61	47	0	0	52	1.00
80295--80634	113	3.0	113	99	0	662	39	3	13	44	1.61
83401--83699	42	7.2	42	96	1	548	22	21	25	31	1.98
83460--83697	21	11.4	21	65	17	122	21	21	25	31	1.98
83401--83699	124	2.4	125	96	1	420	22	21	25	31	1.98
83777--83836	6	10.5	6	83	1	63	31	46	16	5	1.69
85106--85168	19	3.4	17	79	18	63	34	1	1	61	1.15
86426--86458	16	2.1	16	94	0	57	21	18	33	27	1.96
90929--93817	829	3.5	829	99	0	5717	29	16	20	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98506--98553	21	2.3	20	75	3	51	33	16	10	39	1.83
99067--99096	14	2.1	14	93	0	51	6	16	23	53	1.66
99175--99205	16	1.9	16	100	0	62	9	12	19	58	1.62
105485--105529	23	2.0	23	95	0	81	20	31	11	37	1.87
111318--111392	36	2.1	36	85	2	98	44	21	0	34	1.53

Tables:   1

The End!