genome.fa.s3002.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003002.1 Hibiscus syriacus cultivar Beakdansim tig00006213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  268949

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3403--3441	21	1.9	20	84	5	51	25	12	28	33	1.93
4412--4453	3	14.7	3	81	18	54	30	0	0	69	0.89
6470--6832	129	2.8	130	80	2	424	31	10	16	40	1.83
9003--9034	15	2.1	15	100	0	64	28	6	28	37	1.81
9595--12644	339	8.9	347	86	5	4106	36	12	15	36	1.84
9595--12644	172	17.8	174	86	4	4103	36	12	15	36	1.84
11577--11607	15	2.1	15	100	0	62	6	19	0	74	1.03
15546--15609	26	2.5	25	73	16	60	60	6	7	25	1.47
17019--17071	23	2.4	23	81	15	67	67	0	18	13	1.22
24859--24902	11	4.0	11	85	8	54	18	0	4	77	0.94
27179--27224	15	2.9	16	84	12	60	60	0	30	8	1.26
27731--27773	19	2.2	20	87	4	61	48	6	9	34	1.62
31409--31451	19	2.2	20	87	4	61	48	6	9	34	1.62
35767--35843	24	3.2	24	83	0	91	20	19	14	45	1.85
35750--35860	48	2.3	48	81	3	116	20	16	14	48	1.80
37179--37225	3	15.7	3	100	0	94	34	0	0	65	0.93
40479--40535	29	2.0	29	89	0	87	36	15	8	38	1.79
40498--40582	31	2.9	28	74	19	84	37	11	10	40	1.77
42202--42264	26	2.5	26	97	2	119	42	19	12	25	1.86
42259--42299	16	2.6	16	96	0	73	36	29	19	14	1.92
44971--45016	23	2.0	23	100	0	92	26	4	52	17	1.63
46874--46977	31	3.4	30	89	2	154	51	7	13	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50804--50864	3	20.3	3	90	6	97	36	0	0	63	0.94
63891--63994	31	3.4	31	91	2	183	51	7	13	26	1.67
65190--65293	31	3.4	31	85	2	156	52	7	13	25	1.67
66443--66498	28	2.0	28	92	0	94	28	17	5	48	1.69
68006--68037	16	1.9	17	93	6	57	3	9	43	43	1.52
68525--68628	42	2.5	42	84	4	140	30	22	23	24	1.99
68834--69054	57	3.9	57	74	10	181	41	14	9	34	1.79
68834--69054	109	2.0	114	84	8	294	41	14	9	34	1.79
69675--69720	22	2.1	22	88	8	67	60	4	2	32	1.28
71161--72633	174	8.5	174	93	0	2400	36	12	14	36	1.84
74735--74789	27	2.0	27	85	0	74	29	5	18	47	1.71
77382--77434	20	2.7	19	68	5	52	26	11	24	37	1.89
80250--80294	22	2.1	21	83	4	54	6	6	8	77	1.11
80285--80330	20	2.5	19	83	13	53	21	0	2	76	0.90
85575--86050	136	3.5	136	91	1	758	36	17	21	24	1.95
85957--86147	97	2.0	97	92	0	319	35	16	24	23	1.95
87755--87827	21	3.6	19	76	10	56	17	1	8	72	1.16
87763--87814	16	3.2	15	77	22	52	15	1	3	78	0.98
90167--90195	14	2.0	15	93	6	51	51	0	6	41	1.28
95415--95509	21	4.6	20	85	3	100	41	20	25	13	1.89
98097--98142	14	3.4	14	77	11	51	71	0	21	6	1.08
100327--102183	212	8.8	214	91	3	2829	32	17	20	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100656--100770	42	2.8	41	81	4	140	24	23	22	29	1.99
100870--100973	42	2.5	41	79	3	109	25	26	22	25	2.00
101084--101185	42	2.5	41	80	3	114	24	25	23	26	2.00
101288--101389	42	2.5	41	80	3	114	25	25	22	26	2.00
101494--101595	42	2.5	41	82	3	123	25	26	22	25	2.00
100327--102183	622	2.9	627	91	3	2948	32	17	20	29	1.96
101711--101803	42	2.2	42	80	1	107	23	25	23	26	2.00
101911--102012	42	2.5	41	79	6	107	25	24	23	26	2.00
101984--102315	174	1.9	170	90	4	524	33	16	20	29	1.94
102165--102443	132	2.1	132	88	4	409	36	14	17	31	1.90
112350--112713	131	2.8	130	79	3	363	32	9	15	41	1.81
115149--115326	64	2.8	64	80	5	173	29	16	24	29	1.97
123873--123909	19	1.9	19	94	0	65	24	16	37	21	1.93
123768--123953	64	2.9	63	81	6	187	30	16	23	29	1.96
131816--131852	19	1.9	19	94	0	65	24	16	37	21	1.93
131711--131896	64	2.9	63	81	6	187	30	16	23	29	1.96
136065--136110	22	2.1	22	87	0	65	60	4	4	30	1.35
137348--147578	174	58.9	174	89	1	14842	37	11	14	36	1.83
150345--150392	2	24.0	2	100	0	96	50	0	0	50	1.00
153153--153182	14	2.1	14	93	0	51	53	6	10	30	1.60
155031--155083	23	2.4	23	81	15	67	67	0	18	13	1.22
162356--162389	11	3.0	11	87	8	50	20	0	2	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162357--162409	23	2.3	21	79	20	54	22	0	5	71	1.06
165417--165469	26	2.0	26	96	0	97	33	13	30	22	1.92
169416--169486	24	3.0	24	76	0	79	23	9	14	52	1.71
170529--170560	14	2.3	14	94	0	55	43	15	0	40	1.47
170822--170885	3	22.0	3	84	6	87	37	1	0	60	1.06
174119--174175	29	2.0	29	89	0	87	36	15	8	38	1.79
175924--175964	16	2.6	16	96	0	73	34	26	21	17	1.95
180500--180603	31	3.4	30	90	2	163	51	7	14	25	1.68
182937--182980	3	14.3	3	85	4	61	38	0	0	61	0.96
182934--182976	22	2.0	22	100	0	86	44	0	0	55	0.99
183622--183671	3	16.3	3	87	4	73	38	0	0	62	0.96
183619--183661	22	2.0	22	100	0	86	44	0	0	55	0.99
183069--184249	657	1.8	655	90	1	1900	34	14	14	37	1.86
187549--187602	3	18.0	3	84	7	74	38	0	0	61	0.96
187549--187601	19	2.7	20	85	5	81	39	0	0	60	0.97
188241--188313	3	24.0	3	75	8	67	41	2	0	56	1.14
188241--188313	13	6.0	12	76	9	58	41	2	0	56	1.14
188247--188312	19	3.6	19	93	4	109	42	1	0	56	1.08
192404--192507	31	3.4	31	90	2	174	51	6	14	26	1.67
193133--193168	16	2.2	16	100	0	72	47	19	16	16	1.83
194571--194617	21	2.2	21	80	0	58	46	40	6	6	1.55
195233--195264	16	1.9	17	93	6	57	3	9	43	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195726--195823	42	2.4	42	84	5	128	31	22	20	25	1.98
195956--196050	42	2.3	41	83	7	129	31	22	22	24	1.98
196058--196337	58	5.0	55	73	13	198	41	16	9	33	1.80
196115--196336	110	2.0	110	83	4	277	42	16	9	31	1.80
196950--196995	22	2.1	22	84	8	58	63	2	2	32	1.19
198302--199604	174	7.5	174	91	1	2035	36	12	14	36	1.84
199788--199822	2	17.5	2	100	0	70	48	0	0	51	1.00
201721--201778	27	2.1	27	87	6	82	25	5	18	50	1.68
204009--204061	20	2.7	19	68	5	52	26	11	22	39	1.88
205751--205793	4	10.0	4	90	9	59	23	0	0	76	0.78
205752--205793	9	4.8	9	86	13	61	21	0	0	78	0.75
205752--205794	13	3.2	13	96	3	77	20	0	0	79	0.74
209010--209037	9	3.1	9	100	0	56	78	0	10	10	0.96
214676--214708	12	2.8	12	95	4	59	9	0	6	84	0.76
214676--214715	12	3.5	11	86	6	53	10	0	5	85	0.75
217403--217468	27	2.4	27	95	5	116	15	10	4	69	1.32
218628--219102	136	3.5	136	88	2	697	36	17	20	25	1.94
219009--219199	97	2.0	97	91	2	312	36	16	24	23	1.94
218876--219300	233	1.8	233	85	2	593	36	19	21	23	1.95
233473--233511	3	13.7	3	89	10	64	30	0	0	69	0.89
235587--235955	131	2.8	131	80	3	454	31	10	16	41	1.82
239880--262586	174	129.9	174	84	4	25537	36	12	15	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247991--248251	136	1.9	136	87	0	378	35	13	15	35	1.87
267249--267279	15	2.1	15	100	0	62	6	19	0	74	1.03
267264--268949	174	9.7	174	87	1	2318	36	11	15	36	1.84

Tables:   1

The End!