genome.fa.s3015.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003015.1 Hibiscus syriacus cultivar Beakdansim tig00006253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213378

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141411--141710	152	2.0	153	84	5	403	38	16	17	28	1.91
141971--142133	87	1.9	87	93	2	283	34	15	11	39	1.83
142055--142099	23	2.0	23	86	0	63	42	17	6	33	1.76
148304--148349	21	2.1	22	84	15	60	4	50	6	39	1.48
148534--148584	23	2.2	23	96	0	93	19	29	13	37	1.90
152646--152695	24	2.0	25	96	3	93	60	12	12	16	1.60
153849--153892	3	13.7	3	86	9	52	36	0	0	63	0.95
153849--153892	22	2.0	23	86	4	63	36	0	0	63	0.95
155096--155120	4	6.2	4	100	0	50	24	0	0	76	0.80
156887--156923	11	3.4	11	92	0	56	18	8	16	56	1.64
159417--159443	2	13.5	2	100	0	54	51	0	0	48	1.00
160442--161367	4	234.0	4	95	2	1696	49	24	0	25	1.54
161957--162063	33	3.3	32	72	11	92	34	19	12	33	1.89
161966--162063	31	3.1	31	72	10	90	32	19	12	35	1.89
161901--162116	65	3.2	65	78	10	188	29	18	12	39	1.87
162359--162625	83	3.3	82	81	5	312	25	34	19	20	1.96
162359--162552	40	4.6	42	73	14	152	25	34	18	22	1.96
163398--163450	22	2.3	23	81	12	56	66	7	18	7	1.41
167763--167845	33	2.4	34	82	7	98	39	4	4	50	1.45
167710--167886	35	5.1	35	74	16	129	42	7	4	44	1.53
168440--169022	84	7.0	83	78	7	592	24	19	25	31	1.98
168406--169021	249	2.5	248	85	3	799	24	19	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168437--169022	168	3.5	166	83	5	684	24	19	25	31	1.98
169061--170088	106	9.7	106	93	0	1635	23	17	25	33	1.96
175521--175675	35	4.5	33	77	14	136	43	7	3	45	1.49
175521--175698	35	5.1	35	74	18	133	43	7	4	44	1.52
182634--182670	19	1.9	19	88	0	56	35	10	10	43	1.75
185794--186051	54	4.8	54	87	1	358	29	17	19	33	1.95
188682--188738	24	2.4	24	74	11	64	40	15	22	21	1.91
193763--193873	46	2.4	46	84	0	141	26	23	9	40	1.85
193793--193890	20	4.2	24	70	23	77	23	21	10	44	1.82
193793--193894	46	2.2	46	94	0	177	23	20	10	45	1.83
193803--193882	20	3.7	20	75	18	79	21	25	11	42	1.85
194384--194435	20	2.6	20	82	14	63	19	30	17	32	1.95
201545--201757	103	2.1	103	93	0	363	27	13	23	36	1.92
201774--201841	23	3.0	23	91	0	100	20	27	26	25	1.99
205706--205798	21	4.6	20	79	4	105	39	18	23	18	1.92
205703--205798	41	2.3	41	96	0	174	40	17	22	18	1.91
205725--205855	41	3.2	41	80	6	115	38	20	19	20	1.93
205787--205881	20	4.7	20	77	2	82	35	24	16	23	1.95
207716--207760	18	2.5	18	85	0	63	26	42	15	15	1.87
208231--208297	20	3.4	20	81	2	73	38	23	22	14	1.92
208286--208343	14	3.9	14	75	16	62	48	25	18	6	1.73
208272--208348	32	2.4	33	93	2	129	46	24	20	7	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208355--208508	19	8.6	19	72	17	105	13	20	23	42	1.87
208377--208434	14	3.9	14	75	16	62	10	17	24	48	1.78
208360--208450	32	2.8	33	91	3	157	12	18	21	47	1.81
208435--208489	20	2.8	19	89	5	83	16	25	23	34	1.95
210483--210559	14	4.7	15	74	22	59	45	19	22	12	1.84
210493--210559	18	3.8	19	81	18	92	46	17	22	13	1.83
210973--211008	14	2.6	14	90	0	54	30	0	22	47	1.52
211127--211190	18	3.8	18	80	19	84	45	18	21	14	1.85
211125--211172	18	2.6	19	93	6	89	47	16	20	14	1.82
210097--211423	631	2.1	626	97	1	2522	32	12	19	34	1.90
212273--212331	24	2.5	24	82	0	73	28	16	18	35	1.93
212498--212534	12	3.1	12	100	0	74	72	0	27	0	0.84

Tables:   1   2

The End!