Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003017.1 Hibiscus syriacus cultivar Beakdansim tig00006264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251717

Tables:   1   2   

This is table  2  of  2  ( 142 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220464--220531
3
22.3
3
87
3
100
64
0
2
32
1.08
221173--221242
3
23.3
3
88
5
106
62
0
0
37
0.95
219853--221530
709
2.4
711
90
2
2590
39
13
12
33
1.83
222700--222745
20
2.3
20
100
0
92
19
4
32
43
1.71
225156--225674
146
3.6
146
92
1
817
21
26
19
32
1.97
226251--226599
55
6.3
54
78
10
273
27
24
17
30
1.97
226351--227246
54
16.5
54
89
3
1135
22
25
20
31
1.98
227608--227809
36
5.6
36
73
8
124
24
17
21
37
1.94
228930--229289
125
2.9
123
82
5
420
22
27
18
32
1.97
230539--230590
14
3.6
14
73
14
52
13
9
0
76
1.01
230570--230607
11
3.4
11
85
10
51
2
15
0
81
0.80
230535--230621
44
2.0
44
82
8
106
11
14
0
73
1.09
235990--236508
146
3.6
146
91
0
815
21
26
19
33
1.97
238615--238670
28
2.0
28
92
0
94
48
5
17
28
1.69
238626--238680
28
2.0
28
85
0
74
49
3
20
27
1.65
242215--242260
24
2.0
23
86
4
65
58
0
0
41
0.98
243427--243535
24
4.5
24
75
2
85
48
14
16
20
1.81
245661--245693
13
2.4
14
85
10
50
21
21
30
27
1.98
245661--245717
27
2.0
29
83
6
73
22
22
28
26
1.99
245661--245717
14
4.1
14
80
13
64
22
22
28
26
1.99
247827--247869
20
2.2
20
87
4
61
34
9
6
48
1.62
251462--251504
20
2.2
20
87
4
61
34
9
6
48
1.62

Tables:   1   2

The End!