genome.fa.s3024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003024.1 Hibiscus syriacus cultivar Beakdansim tig00006292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116842

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5771--5812	5	8.8	5	97	2	70	0	0	14	85	0.59
6318--6350	2	16.5	2	100	0	66	48	0	0	51	1.00
9375--9451	34	2.2	36	90	6	122	48	0	5	46	1.24
15623--15661	20	1.9	21	89	5	62	20	20	20	38	1.94
15673--15710	19	2.0	19	94	0	67	18	26	28	26	1.98
15624--15712	9	9.3	9	70	11	52	17	25	23	32	1.97
15708--15745	17	2.2	17	95	0	67	18	44	21	15	1.86
22833--22871	20	1.9	21	89	5	62	17	25	23	33	1.96
22833--22871	10	3.9	10	83	9	53	17	25	23	33	1.96
30699--31124	38	11.2	36	71	16	202	42	2	7	47	1.44
30750--30934	74	2.5	72	72	14	85	42	2	7	47	1.44
30678--30927	35	6.9	37	75	15	184	42	2	7	48	1.44
30678--30927	73	3.5	70	78	13	240	42	2	7	48	1.44
30871--30984	13	9.0	13	68	22	64	39	0	9	50	1.35
30871--30984	50	2.3	51	92	1	185	39	0	9	50	1.35
30838--31022	88	2.2	84	90	5	291	40	1	8	49	1.41
31090--31147	27	2.1	27	87	6	82	50	0	6	43	1.29
31083--31147	28	2.4	27	82	12	71	46	1	7	44	1.41
31111--31219	36	2.9	36	86	5	128	46	1	3	47	1.30
31046--31183	66	2.2	65	84	10	187	46	2	7	44	1.43
31226--31301	3	24.7	3	75	19	68	27	1	0	71	0.95
31223--31301	13	6.0	14	78	17	73	29	1	0	69	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31226--31301	10	7.9	10	79	20	83	27	1	0	71	0.95
31225--31302	40	2.0	40	87	5	113	26	1	0	71	0.93
31238--31309	17	4.1	17	78	15	67	22	2	0	75	0.94
33400--33444	21	2.1	21	87	0	63	31	28	24	15	1.96
34028--34062	18	1.9	18	88	11	54	54	5	17	22	1.64
34299--34326	2	14.0	2	100	0	56	50	0	0	50	1.00
34961--35264	149	2.0	149	98	0	590	26	17	20	34	1.95
35243--35287	23	2.0	23	86	0	63	20	24	28	26	1.99
38413--38457	21	2.1	21	87	0	63	31	28	24	15	1.96
39040--39074	18	1.9	18	88	11	54	54	5	17	22	1.64
39311--39348	2	19.0	2	100	0	76	50	0	0	50	1.00
39982--40285	149	2.0	149	96	0	554	27	17	20	34	1.95
40264--40308	23	2.0	23	86	0	63	20	24	28	26	1.99
42450--42494	19	2.4	19	92	3	74	13	11	8	66	1.44
45866--46792	165	5.6	164	86	2	1146	30	25	20	23	1.99
47362--47796	38	11.6	37	69	20	130	41	2	7	48	1.45
47384--47798	36	10.9	38	70	18	149	41	2	7	47	1.45
47363--47610	71	3.4	73	79	13	223	42	2	7	47	1.44
47554--47667	13	9.0	13	68	22	64	39	0	9	50	1.35
47554--47667	50	2.3	51	92	1	185	39	0	9	50	1.35
47521--47705	88	2.2	84	90	5	291	40	1	8	49	1.41
47766--47832	27	2.4	29	82	9	86	44	4	7	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47729--47866	66	2.2	63	82	10	165	45	2	6	44	1.44
47801--47888	36	2.4	37	86	5	115	47	2	2	47	1.27
48029--48127	21	4.8	20	75	6	81	37	23	18	21	1.94
48094--48267	20	8.6	20	80	6	190	35	25	20	18	1.95
48650--48720	33	2.2	33	92	0	115	11	22	18	47	1.80
48799--48876	41	1.9	41	97	0	147	44	16	25	12	1.83
48800--48875	21	3.7	21	83	3	109	46	17	25	11	1.82
48860--48916	14	3.7	14	75	20	60	42	22	24	10	1.85
48855--48919	33	2.0	33	100	0	130	43	21	24	10	1.84
48858--48932	33	2.3	33	92	0	123	45	24	21	9	1.81
48928--48997	19	3.7	19	96	0	122	11	21	22	44	1.84
50621--50656	14	2.6	14	95	0	63	33	0	22	44	1.53
50763--50860	19	5.4	19	84	13	143	45	17	22	14	1.84
50763--50878	53	2.2	53	98	1	225	43	18	24	13	1.86
50885--51137	33	7.5	33	82	11	307	13	22	18	45	1.83
50907--51137	19	13.4	19	73	21	224	12	22	18	46	1.83
50907--51070	52	3.2	52	100	0	328	13	22	17	46	1.83
50885--51137	85	3.0	84	86	7	368	13	22	18	45	1.83
53613--53659	24	2.0	24	87	8	69	38	21	14	25	1.92
54342--54571	20	11.5	20	84	1	228	20	18	24	36	1.94
54558--54640	21	4.0	21	73	6	78	25	16	24	33	1.96
54538--54636	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54805--54880	3	24.7	3	75	19	68	27	1	0	71	0.95
54805--54880	10	7.9	10	79	20	83	27	1	0	71	0.95
54798--54881	40	2.1	40	86	4	116	26	1	0	72	0.92
54816--54882	19	3.7	18	81	18	77	25	1	0	73	0.92
54805--54880	7	12.3	6	81	15	68	27	1	0	71	0.95
54817--54888	17	4.1	17	78	15	67	22	2	0	75	0.94
59466--59524	23	2.6	23	89	5	84	44	0	1	54	1.10
59470--59552	28	3.2	26	76	16	73	40	1	3	54	1.26
59863--59921	29	2.0	31	90	6	95	35	5	16	42	1.71
60115--60156	21	2.0	21	95	0	75	23	21	28	26	1.99
60442--60511	34	2.1	32	89	5	104	31	15	31	21	1.95
66432--66511	31	2.6	32	76	7	85	28	26	25	20	1.99
70349--70375	13	2.1	13	100	0	54	48	7	7	37	1.59
72431--72610	61	3.0	60	80	5	186	34	16	5	44	1.69
72719--72856	59	2.3	60	80	6	163	39	3	23	33	1.72
81747--81779	16	2.0	17	88	5	50	15	15	15	54	1.71
89226--89259	2	17.0	2	100	0	68	50	0	0	50	1.00
90802--90861	30	2.0	29	87	3	84	50	13	11	25	1.75
94107--94137	9	3.4	9	95	0	53	80	6	0	12	0.89
97355--97403	23	2.1	23	85	7	64	59	12	2	26	1.44
98441--98521	37	2.1	39	84	13	107	53	2	0	44	1.14
107238--107732	229	2.2	227	95	1	891	45	7	7	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108011--108049	20	2.0	20	90	10	62	56	10	15	17	1.66
107797--108260	182	2.6	178	84	5	602	42	14	16	27	1.86
110411--110475	21	3.1	21	93	0	103	41	10	30	16	1.83
112325--112373	19	2.6	19	96	0	89	32	2	10	55	1.45
112461--113810	390	3.4	397	94	4	2384	36	14	17	30	1.90
112461--113810	585	2.3	589	95	2	2436	36	14	17	30	1.90
115249--115358	6	17.7	6	78	7	76	37	6	32	23	1.80
115249--115358	12	8.8	12	81	7	103	37	6	32	23	1.80
115266--115360	3	31.3	3	80	2	109	35	5	33	25	1.78

Tables:   1

The End!