Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003025.1 Hibiscus syriacus cultivar Beakdansim tig00006295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85215

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--1321
84
14.8
84
79
6
1193
24
19
24
30
1.98
93--1329
165
7.5
164
80
7
1225
24
19
24
31
1.98
5108--5140
16
2.1
15
94
5
57
66
0
6
27
1.15
5216--5272
20
2.8
19
82
15
62
71
1
5
21
1.14
5240--5302
13
4.8
13
73
17
51
73
1
6
19
1.13
5215--5277
6
9.5
6
78
14
54
73
1
4
20
1.11
6672--6738
33
2.0
34
97
2
127
77
0
0
22
0.77
6672--6731
4
14.8
4
92
3
102
78
0
0
21
0.75
6673--6738
29
2.2
30
94
2
116
77
0
0
22
0.77
6772--6809
14
2.6
14
87
4
58
52
0
0
47
1.00
6807--6866
26
2.2
26
82
5
66
43
5
3
48
1.41
6831--7115
36
8.2
34
76
15
241
43
5
5
45
1.50
6760--7031
97
2.8
97
78
12
253
45
4
3
45
1.42
6932--7120
74
2.6
75
79
9
198
44
6
4
44
1.48
13376--13441
30
2.2
30
86
0
87
12
28
22
36
1.90
20505--20561
23
2.5
23
97
2
107
47
28
7
17
1.73
24004--24157
65
2.4
65
82
10
199
35
20
14
30
1.92
29962--30059
21
4.7
20
74
21
69
26
19
18
35
1.95
30537--30569
12
2.6
13
90
4
50
36
12
6
45
1.66
32659--32781
65
1.9
65
84
3
167
30
21
17
29
1.97
35517--35601
34
2.5
34
92
0
143
57
0
1
41
1.06
39083--39107
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39368--39740
158
2.4
155
80
4
408
47
6
16
30
1.71
39397--39762
157
2.3
159
83
3
454
48
6
16
28
1.70
44077--44135
24
2.5
24
85
0
73
32
23
23
20
1.98
50860--50944
24
3.6
24
75
9
77
30
23
22
23
1.99
50915--50959
23
2.0
23
90
0
72
26
26
22
24
2.00
53779--53883
37
2.8
36
81
5
120
41
15
12
30
1.84
57799--57933
46
3.0
46
91
3
211
71
10
12
5
1.28
57799--57911
23
5.0
22
71
14
86
71
10
12
5
1.29
58543--58612
22
3.2
22
95
0
131
37
25
14
22
1.92
59358--60611
106
11.9
106
90
1
1896
34
24
18
22
1.96
64702--64816
41
2.9
39
81
11
126
44
1
8
45
1.45
64794--64888
46
2.1
45
90
2
145
45
1
5
48
1.32
64840--65057
36
6.2
36
76
17
203
44
0
8
46
1.39
64782--64943
82
2.0
82
85
7
222
43
0
7
48
1.35
64917--64966
25
2.0
24
92
3
82
48
0
6
46
1.27
64933--65030
37
2.5
38
83
9
110
45
2
7
44
1.42
65051--65089
16
2.5
16
84
16
55
28
0
5
66
1.12
65052--65102
16
3.1
16
83
13
52
25
0
3
70
1.04
65080--65115
4
8.8
4
87
6
54
22
0
2
75
0.94
65082--65116
13
2.8
13
91
4
54
22
0
2
74
0.95
65109--65142
16
2.2
16
89
5
52
5
5
8
79
1.05
65484--65543
23
2.6
23
91
0
93
50
25
11
13
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66497--66560
6
10.5
6
71
15
51
18
4
1
75
1.06
66554--66590
4
9.8
4
82
11
51
27
0
0
72
0.84
66497--66590
18
5.2
18
72
17
54
22
3
1
73
1.04
66550--66607
22
2.6
22
83
8
64
29
3
0
67
1.07
67362--67402
3
14.0
3
85
14
59
65
0
2
31
1.05
68683--68721
3
12.7
3
83
5
51
66
0
0
33
0.92
74173--74219
3
16.3
3
78
8
53
31
2
2
63
1.18
75776--75848
5
14.6
5
71
14
53
15
4
5
75
1.14
84438--84467
15
1.9
16
93
6
53
43
3
0
53
1.17

Tables:   1

The End!