genome.fa.s305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000305.1 Hibiscus syriacus cultivar Beakdansim tig00000574_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199618

Tables:   1   2   

This is table  1  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12403--12436	17	2.0	17	100	0	68	47	5	5	41	1.52
12677--12711	18	1.9	18	94	0	61	22	34	11	31	1.90
13001--13225	74	3.0	73	78	8	213	42	4	9	44	1.55
13001--13215	34	5.9	33	72	18	124	43	4	9	43	1.56
13272--13347	37	2.1	37	87	0	107	47	6	3	42	1.48
13276--13432	33	4.7	31	70	16	93	46	4	7	42	1.51
14645--14675	12	2.6	12	100	0	62	35	0	12	51	1.40
14711--14754	15	3.0	14	78	21	54	20	9	0	70	1.14
14763--14833	36	2.0	36	83	5	90	9	11	5	73	1.25
20211--20997	84	9.5	84	79	5	712	31	24	20	24	1.98
20250--20991	164	4.5	163	79	6	603	31	24	19	24	1.98
20211--20932	248	2.9	249	92	1	1189	30	24	20	24	1.98
21620--21861	38	6.6	37	73	17	170	45	3	7	43	1.49
21621--21861	33	6.6	36	71	17	142	45	3	7	43	1.48
21667--21861	72	2.7	71	79	11	191	45	2	6	45	1.42
21713--21861	73	2.1	71	83	7	185	47	2	4	46	1.32
21794--21923	33	4.2	30	81	14	115	43	5	5	46	1.49
21794--21923	61	2.1	63	81	11	153	43	5	5	46	1.49
21826--21927	33	3.3	32	84	11	117	45	5	5	43	1.52
21854--22001	69	2.1	69	81	9	169	45	4	7	42	1.51
21854--21993	33	4.2	33	73	13	94	46	4	7	42	1.51
33079--33118	3	13.3	3	89	10	64	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33083--33126	22	2.0	22	91	8	72	29	0	2	68	1.02
39993--40030	11	3.4	11	89	7	58	71	10	13	5	1.30
41205--41257	10	4.8	12	71	17	51	49	18	1	30	1.59
41205--41261	4	15.2	4	75	14	50	49	19	1	29	1.58
41215--41261	18	2.6	18	93	0	76	48	19	2	29	1.60
41205--41257	14	3.6	14	75	9	61	49	18	1	30	1.59
41714--41944	105	2.2	101	81	9	252	30	18	12	38	1.87
42099--42190	34	2.6	34	79	3	85	30	19	13	36	1.90
42442--42598	29	5.6	28	84	7	187	29	11	17	41	1.84
42442--42598	28	5.6	28	84	4	192	29	11	17	41	1.84
42442--42603	57	2.9	56	84	8	179	29	11	16	41	1.84
42647--42777	30	4.1	30	74	12	127	33	9	12	43	1.76
42558--42777	92	2.3	95	83	7	256	32	10	14	42	1.80
42664--42855	67	2.9	68	93	3	318	30	13	11	44	1.79
42857--42936	40	2.0	40	95	0	142	31	21	11	36	1.88
43298--43372	35	2.1	36	85	7	100	36	18	10	34	1.86
43645--43698	28	1.9	28	85	7	74	22	16	16	44	1.86
43801--44052	43	5.8	43	73	10	190	26	30	19	23	1.98
43710--44052	129	2.7	129	95	1	616	25	30	19	23	1.98
43762--43962	40	4.8	40	73	13	163	24	32	18	23	1.97
43729--44094	43	8.4	41	71	15	188	25	30	19	24	1.98
44249--44291	3	14.3	3	90	9	70	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44249--44291	19	2.4	19	92	7	72	30	0	0	69	0.88
44406--44453	25	1.9	25	100	0	96	39	16	16	27	1.90
49625--49674	22	2.4	22	87	9	70	66	0	4	30	1.10
49705--49801	36	2.7	35	85	6	124	43	6	5	45	1.51
49777--50005	36	6.2	37	79	7	241	44	6	5	44	1.51
55961--56002	21	2.0	21	95	0	75	30	19	19	30	1.96
62739--63005	113	2.4	113	91	2	412	29	20	12	37	1.90
62939--63038	38	2.6	39	88	7	159	23	24	9	44	1.82
62830--63150	151	2.1	151	86	4	441	27	21	13	38	1.90
63096--63522	224	1.9	224	95	0	766	25	18	14	41	1.89
63522--63668	76	1.9	76	94	0	258	35	19	20	24	1.96
64338--64397	22	2.7	22	86	0	93	41	11	11	35	1.78
65385--65458	36	2.1	34	82	9	87	31	20	14	33	1.93
66375--66712	114	3.0	114	96	0	613	30	21	15	32	1.95
68860--68890	15	2.1	15	93	0	53	0	29	0	70	0.87
68865--68957	7	12.3	7	71	20	55	3	19	3	74	1.10
68860--68908	16	3.1	15	82	8	53	2	28	0	69	1.00
68865--68921	16	3.9	15	77	11	55	3	21	0	75	0.95
68865--68925	32	1.9	31	83	9	79	3	21	0	75	0.94
68865--68931	17	4.0	16	76	14	55	2	20	0	76	0.92
68915--68968	26	2.0	26	96	3	99	3	16	11	68	1.33
71688--71746	12	5.2	12	78	12	61	55	6	11	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71713--71746	6	5.7	6	89	0	50	55	2	11	29	1.50
73330--73413	38	2.1	38	82	13	96	65	1	5	27	1.23
76283--76343	26	2.3	28	75	18	67	37	1	1	59	1.17
76296--76351	26	2.2	26	81	9	62	42	1	1	53	1.21
88016--88087	27	2.7	26	74	16	67	40	1	2	55	1.23
90403--90434	17	1.9	16	93	6	55	56	0	3	40	1.15
90663--90729	33	2.0	33	97	0	125	43	13	5	37	1.69
97641--97686	15	3.3	15	76	14	53	56	0	2	41	1.11
99135--99273	3	46.3	3	94	0	233	62	0	3	33	1.12
99597--100155	113	5.0	113	95	0	949	29	18	14	37	1.90
100947--101621	82	8.1	82	88	5	966	34	21	13	30	1.92
100998--101636	165	3.9	164	90	4	1043	34	20	13	30	1.92
107100--107135	17	2.2	16	95	5	63	69	5	8	16	1.33
108656--108699	19	2.3	19	80	7	54	63	0	4	31	1.14
109361--109406	15	3.3	15	76	14	53	56	0	2	41	1.11
110281--110315	15	2.3	15	90	0	52	0	22	2	74	0.95
110850--111006	3	52.3	3	94	0	269	63	0	3	33	1.11
112668--112731	23	2.8	22	66	15	58	25	14	3	57	1.51
114053--114094	18	2.3	18	100	0	84	30	21	0	47	1.51
116169--116242	27	2.8	24	77	18	69	33	0	5	60	1.19
121650--121678	11	2.6	11	100	0	58	20	24	10	44	1.82
124750--124775	9	2.9	9	100	0	52	57	7	0	34	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124887--124915	6	4.8	6	100	0	58	0	48	0	51	1.00
125784--125828	17	2.8	16	83	12	56	8	17	6	66	1.40
127507--127531	13	1.9	13	100	0	50	44	0	0	56	0.99
133469--133529	23	2.9	21	85	7	79	22	36	22	18	1.95
133470--133555	21	4.1	21	78	8	68	23	34	25	16	1.95
137148--137293	72	2.0	73	92	4	242	39	17	18	24	1.92
138678--138766	14	5.6	14	71	23	70	39	24	24	11	1.88
138654--138821	33	4.9	33	92	4	228	41	22	23	11	1.87
138629--138826	19	11.1	18	73	18	141	42	21	23	12	1.87
138629--138821	66	2.8	69	83	9	248	43	21	23	12	1.86
138822--138869	20	2.5	19	77	12	53	10	16	27	45	1.80
139394--139505	20	5.6	20	82	4	82	21	19	20	38	1.94
139386--139520	41	3.3	40	77	10	130	25	17	19	37	1.94
139391--139628	61	3.9	60	72	10	180	27	18	19	33	1.96
139502--139557	20	2.7	21	80	5	69	42	16	21	19	1.89
139495--139567	21	3.5	21	79	3	76	36	17	21	23	1.94
139577--139628	20	2.5	21	87	3	70	21	23	17	38	1.93
139412--139643	41	5.7	40	73	7	128	27	18	19	33	1.96
139618--139670	21	2.5	22	78	6	65	35	18	24	20	1.95
140667--140701	16	2.2	16	94	0	61	34	2	17	45	1.63
140858--140987	30	5.1	26	66	22	71	42	1	1	54	1.19
140940--141006	27	2.3	27	82	12	80	43	1	0	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150455--150497	15	2.8	16	79	6	54	27	6	23	41	1.80
150455--150512	30	1.9	30	85	0	80	29	6	24	39	1.81
150637--150710	25	3.0	24	76	11	87	20	22	27	29	1.98
150637--150710	24	3.0	25	76	7	89	20	22	27	29	1.98
151191--151243	18	3.1	16	77	15	52	45	5	15	33	1.69
151211--151243	17	2.0	17	88	5	50	45	6	18	30	1.73
151705--151957	43	5.8	43	74	9	176	51	8	13	26	1.70
152357--153209	182	4.7	182	90	2	1265	39	14	16	28	1.89
152361--153209	361	2.3	358	88	4	1286	40	14	16	28	1.88
155106--155160	24	2.5	22	81	18	62	49	0	3	47	1.19

Tables:   1   2