genome.fa.s305.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000305.1 Hibiscus syriacus cultivar Beakdansim tig00000574_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199618

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155560--155603	21	2.1	21	91	0	70	43	11	31	13	1.80
155637--155786	33	5.0	33	79	20	179	29	0	47	22	1.56
155658--155772	25	4.3	25	83	16	158	29	0	47	21	1.57
155636--155786	58	2.6	58	77	10	191	29	0	47	22	1.56
155691--155786	50	1.9	50	91	4	158	29	0	48	21	1.50
155691--155772	25	3.3	25	100	0	164	30	0	48	20	1.50
155970--156026	18	3.2	18	89	0	87	57	0	33	8	1.29
157958--159117	199	5.8	200	84	3	1440	37	13	16	32	1.88
157961--159095	401	2.8	398	86	2	1544	37	14	16	31	1.88
157958--159117	600	1.9	600	86	3	1638	37	13	16	32	1.88
161913--161959	24	2.0	24	86	0	67	36	4	12	46	1.62
163295--164261	200	4.8	199	84	3	1228	38	13	16	31	1.88
165824--165872	19	2.6	19	80	0	62	34	6	8	51	1.57
169365--169419	18	3.1	18	83	0	74	14	12	54	18	1.71
170764--170807	23	1.9	23	86	9	63	29	0	2	68	1.02
173589--173772	47	3.9	48	84	2	239	30	8	19	40	1.82
174878--174932	3	17.0	3	88	3	56	41	0	0	58	0.98
174875--174944	18	3.5	18	81	18	77	45	0	0	54	0.99
175946--176001	29	1.9	29	89	7	87	26	5	3	64	1.32
176310--176342	2	16.5	2	93	0	57	51	0	0	48	1.00
176597--176634	17	2.2	17	90	0	58	42	0	0	57	0.98
180647--180702	28	2.0	28	100	0	112	42	17	14	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181471--181502	2	16.0	2	100	0	64	50	0	0	50	1.00
184124--184341	114	1.9	114	89	1	339	32	15	21	30	1.94
186722--186776	22	2.5	22	90	0	92	34	12	14	38	1.84
187450--188196	76	9.9	76	95	1	1254	22	20	21	35	1.96
188364--188397	17	2.1	16	94	5	59	44	0	0	55	0.99
188367--188428	20	2.9	23	81	18	80	43	0	0	56	0.99
189848--190068	109	2.0	111	80	8	254	36	6	9	47	1.63
189872--190068	110	1.8	109	82	6	256	36	7	10	46	1.66
192766--193038	140	2.0	139	99	0	537	28	19	18	34	1.95
193932--193960	2	14.5	2	100	0	58	51	0	0	48	1.00
196696--196748	24	2.2	24	100	0	106	41	15	3	39	1.65
197140--197208	23	3.0	23	89	0	93	30	26	23	20	1.98
198674--198734	21	2.9	21	95	2	104	18	27	24	29	1.98

Tables:   1   2

The End!