genome.fa.s3052.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003052.1 Hibiscus syriacus cultivar Beakdansim tig00006362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168972

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647--691	23	2.0	23	82	8	56	35	17	2	44	1.62
9189--9228	21	1.9	21	89	0	62	25	32	32	10	1.89
10163--10208	19	2.5	18	86	6	65	36	2	0	60	1.09
12008--12072	14	4.6	14	90	1	76	29	32	16	21	1.96
12008--12072	28	2.3	29	86	2	96	29	32	16	21	1.96
15599--15649	15	3.2	15	70	24	50	25	1	23	49	1.61
16251--16284	13	2.5	14	85	9	52	44	2	2	50	1.32
16348--16395	21	2.2	23	85	7	64	60	4	0	35	1.16
16631--16719	21	4.3	21	85	8	103	30	24	12	32	1.92
16638--16729	41	2.2	42	86	9	134	30	23	13	32	1.93
16584--16720	62	2.2	62	79	8	147	31	24	12	31	1.92
16566--16780	20	10.6	20	74	8	123	31	24	13	31	1.93
16692--16800	20	5.5	20	74	12	82	28	22	14	34	1.93
19099--19134	16	2.2	16	100	0	72	50	16	5	27	1.68
19272--19335	20	3.2	20	84	0	65	23	23	18	34	1.96
19316--19390	29	2.6	29	95	0	132	26	28	17	28	1.98
19457--19607	64	2.4	64	89	1	223	52	15	2	29	1.57
19586--19618	13	2.4	14	95	5	59	48	21	0	30	1.50
20962--21076	21	5.5	20	75	12	97	23	20	35	20	1.96
20962--21082	42	2.9	42	87	2	172	24	20	34	19	1.96
20982--21078	21	4.6	21	78	7	99	24	20	32	21	1.97
22037--22080	16	2.8	16	89	0	61	63	15	0	20	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23208--23324	21	5.7	21	77	7	98	38	17	20	23	1.93
23226--23353	62	2.1	62	92	0	211	35	15	20	28	1.93
23393--23434	20	2.1	20	86	0	57	14	14	21	50	1.78
23984--24035	20	2.6	20	87	0	77	23	15	25	36	1.93
29191--29216	13	2.0	13	100	0	52	23	30	30	15	1.95
29206--29246	17	2.4	17	100	0	82	14	24	43	17	1.86
29187--29216	7	4.4	7	91	8	53	23	30	30	16	1.96
29240--29291	20	2.7	19	84	3	59	26	26	25	21	1.99
36472--36508	13	2.7	14	91	8	67	24	29	29	16	1.96
36472--36508	7	5.4	7	93	6	67	24	29	29	16	1.96
36498--36554	17	3.4	17	92	4	98	15	24	42	17	1.88
36548--36618	19	3.7	19	92	1	106	26	29	25	18	1.98
36550--36618	9	7.1	10	76	12	72	27	30	23	18	1.98
39120--39175	19	3.1	19	66	7	53	28	14	30	26	1.95
43863--43954	35	2.7	35	71	20	75	50	1	4	44	1.29
46374--46424	20	2.6	20	90	3	77	19	0	5	74	1.02
47581--47607	6	4.5	6	100	0	54	0	66	0	33	0.92
49556--49604	20	2.5	20	77	6	57	42	2	0	55	1.11
49570--49612	23	2.0	21	86	9	59	41	4	0	53	1.21
50405--50487	2	40.5	2	83	9	105	46	1	3	48	1.27
68385--68440	29	2.0	29	96	3	105	30	17	17	33	1.94
68388--68444	28	2.0	28	90	6	89	31	17	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70060--70107	8	5.8	8	85	9	69	81	0	8	10	0.88
70047--70142	9	11.2	8	74	14	77	79	0	14	6	0.92
70053--70154	35	2.9	35	79	18	115	79	0	13	6	0.92
70053--70143	26	3.5	27	84	12	120	80	0	13	6	0.90
70060--70142	25	3.2	25	76	18	66	80	0	12	7	0.89
72072--72098	14	1.9	14	100	0	54	14	7	11	66	1.43
75678--75721	20	2.3	19	88	4	61	25	20	29	25	1.99
81578--81725	77	1.9	78	82	6	185	41	8	4	45	1.54
100157--100198	21	2.0	21	81	9	50	23	19	2	54	1.55
100972--101018	24	1.9	25	86	4	69	21	6	6	65	1.38
116005--116051	21	2.2	21	100	0	94	27	31	19	21	1.97
116671--116712	20	2.1	20	90	0	66	33	21	21	23	1.97
116747--116796	20	2.5	20	96	0	91	28	24	14	34	1.93
117632--117665	12	2.8	12	90	0	50	55	29	0	14	1.40
117786--117832	24	2.0	24	95	0	85	27	21	17	34	1.95
120103--120143	18	2.3	18	95	0	73	53	24	4	17	1.63
120319--120364	20	2.3	20	76	0	56	32	21	21	23	1.98
120403--120499	20	4.8	20	87	5	124	18	16	24	40	1.91
120513--120556	20	2.2	20	87	0	61	18	18	25	38	1.92
120682--120716	14	2.5	14	100	0	70	48	20	0	31	1.50
120616--120790	78	2.3	77	90	1	269	50	17	2	30	1.58
122155--122262	21	5.1	21	75	8	94	26	18	33	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122160--122262	42	2.5	42	85	3	145	26	19	32	22	1.97
122575--122649	21	3.6	21	71	12	64	32	37	10	20	1.87
124357--124404	22	2.1	22	84	7	60	20	16	43	18	1.88
124496--124533	20	2.0	20	84	5	51	44	13	15	26	1.83
126513--126562	4	12.5	4	100	0	100	76	0	0	24	0.80
127295--127492	51	4.1	49	78	10	201	27	12	11	48	1.76
135715--135747	11	2.8	12	90	4	50	42	15	3	39	1.62
146603--146633	13	2.4	13	94	0	53	61	16	6	16	1.54
147488--147542	20	2.8	20	97	2	103	0	18	36	45	1.49
162720--163160	230	1.9	224	88	4	661	30	12	17	39	1.87
163523--163568	18	2.6	18	89	3	67	28	28	8	34	1.87

Tables:   1

The End!