genome.fa.s3073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003073.1 Hibiscus syriacus cultivar Beakdansim tig00006407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61684

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11333--11379	22	2.1	22	100	0	94	31	25	21	21	1.98
11725--11754	9	3.3	9	100	0	60	23	0	23	53	1.46
12151--12177	10	2.7	10	100	0	54	48	0	0	51	1.00
16483--16532	24	2.1	24	88	7	75	56	0	2	42	1.11
16492--16588	30	3.3	30	81	5	92	57	0	0	42	0.98
17161--17274	52	2.2	52	100	0	228	30	18	21	28	1.97
18916--18950	2	17.5	2	93	0	61	48	0	2	48	1.16
23413--23444	2	16.0	2	100	0	64	50	0	0	50	1.00
27939--28120	75	2.4	75	82	5	208	34	15	11	38	1.84
29033--29059	2	13.5	2	100	0	54	48	0	0	51	1.00
29059--29095	2	18.5	2	100	0	74	0	0	48	51	1.00
29393--29439	22	2.3	19	85	10	58	21	8	8	61	1.51
29547--29605	30	1.9	31	86	3	84	57	5	1	35	1.31
32224--32272	15	3.2	16	80	8	66	63	14	4	18	1.46
32271--32340	29	2.4	29	97	0	131	45	14	2	37	1.59
32339--32384	16	2.6	17	76	23	51	60	17	4	17	1.51
33622--33779	64	2.5	63	84	7	185	34	17	20	26	1.95
34269--34303	2	17.5	2	93	0	61	51	2	0	45	1.16
34961--35048	31	2.8	30	91	3	113	32	17	19	30	1.94
34978--35048	31	2.3	31	100	0	142	36	15	19	28	1.92
35070--35134	30	2.2	30	91	0	103	26	21	21	30	1.98
35081--35142	30	2.1	30	100	0	124	24	19	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38355--38495	64	2.2	63	86	5	185	36	18	19	26	1.94
39005--39037	2	16.5	2	100	0	66	51	0	0	48	1.00
39712--39799	31	2.8	31	96	0	158	32	17	19	30	1.94
39804--39868	30	2.2	30	91	0	103	26	21	21	30	1.98
39815--39876	30	2.1	30	100	0	124	24	19	24	32	1.98
58041--58075	18	1.9	18	94	0	61	48	5	5	40	1.51

Tables:   1

The End!