genome.fa.s3120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003120.1 Hibiscus syriacus cultivar Beakdansim tig00006534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70308

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182--236	22	2.7	21	86	8	69	25	18	29	27	1.98
1138--1517	66	5.7	68	85	5	535	32	13	22	31	1.93
1468--1701	80	3.0	76	85	8	283	37	14	22	26	1.92
4553--4792	129	1.9	130	83	4	315	44	11	12	30	1.79
5084--5122	21	1.9	20	84	5	51	46	0	0	53	1.00
5874--6052	92	1.9	92	90	0	286	24	13	20	40	1.89
6102--6145	21	2.0	22	95	4	81	52	0	4	43	1.22
6104--6152	21	2.2	22	89	7	73	53	0	6	40	1.26
8210--8251	22	1.9	22	85	0	57	66	0	0	33	0.92
8894--8953	24	2.5	24	97	0	111	21	23	25	30	1.99
14836--14922	21	4.1	21	92	0	138	45	20	20	12	1.83
15170--15237	6	11.2	6	87	9	102	17	14	19	48	1.81
19713--20171	36	12.4	37	71	15	184	34	20	18	26	1.96
19625--19995	116	3.2	116	93	0	627	34	21	18	25	1.96
19964--20026	31	2.0	31	93	0	108	38	20	14	26	1.91
19943--20177	72	3.3	70	80	8	246	34	21	18	25	1.96
20190--20821	54	11.5	55	89	4	791	33	18	24	22	1.97
31555--31645	31	3.0	29	81	13	103	60	1	3	35	1.20
31589--31613	12	2.1	12	100	0	50	72	0	0	28	0.86
31715--31763	23	2.0	24	84	7	64	59	0	6	34	1.22
43507--43563	15	3.7	15	77	9	69	22	35	26	15	1.94
43507--43575	15	4.3	16	75	10	52	23	33	26	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44879--44929	24	2.1	24	100	0	102	43	19	7	29	1.79
47949--47977	2	14.5	2	100	0	58	48	0	0	51	1.00
48113--48158	24	1.9	24	82	8	58	21	26	15	36	1.93
48197--48316	57	2.1	57	98	1	233	21	20	32	25	1.98
56085--56134	21	2.3	21	89	3	73	4	38	12	46	1.60
56085--56148	24	2.8	24	86	6	80	4	39	10	45	1.60
56100--56145	12	3.8	12	82	0	56	4	41	10	43	1.59
64483--64924	42	10.6	42	76	5	344	28	24	18	29	1.98
64483--64924	84	5.3	84	77	6	391	28	24	18	29	1.98
64483--64886	124	3.2	124	88	2	533	27	24	18	29	1.98
64559--64923	124	2.9	124	89	2	534	27	23	18	30	1.97
70101--70138	18	2.1	18	100	0	76	23	23	5	47	1.72

Tables:   1

The End!