Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003133.1 Hibiscus syriacus cultivar Beakdansim tig00006571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143138

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6916--7001
42
2.0
42
97
0
163
34
24
4
36
1.76
9610--9667
27
2.1
27
87
0
80
12
24
3
60
1.47
10871--10895
11
2.3
11
100
0
50
84
0
0
16
0.63
22659--22731
10
7.3
10
71
0
56
54
17
12
15
1.70
22659--22731
30
2.4
30
100
0
146
54
17
12
15
1.70
26453--26563
56
2.0
56
92
0
186
37
11
12
37
1.80
27083--27120
19
2.0
20
89
5
60
23
18
10
47
1.79
27718--27831
47
2.4
47
89
0
165
25
15
20
38
1.92
36566--36633
27
2.6
27
90
4
113
29
13
16
41
1.86
40335--40395
27
2.3
27
100
0
122
29
13
14
42
1.84
53645--53911
96
2.7
98
87
8
398
29
18
20
30
1.97
57492--57540
25
2.0
25
95
0
89
38
18
14
28
1.90
67045--67084
19
2.1
19
100
0
80
40
0
17
42
1.49
68171--68212
21
2.0
21
95
0
75
26
28
21
23
1.99
68223--68271
19
2.6
19
90
0
80
38
12
8
40
1.72
68336--68426
31
3.0
31
96
3
168
42
17
6
32
1.75
70315--70394
32
2.5
32
97
0
151
20
16
26
37
1.93
89341--89409
34
2.1
33
84
7
88
31
14
15
37
1.88
91669--91699
16
2.0
16
93
6
55
32
12
0
54
1.38
94563--94647
37
2.3
37
100
0
170
8
22
29
40
1.83
102267--102298
12
2.7
12
95
0
55
12
12
31
43
1.80
102312--102869
41
13.6
41
81
4
561
27
19
16
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105031--105254
64
3.5
63
81
7
206
32
20
20
25
1.98
105483--105529
12
3.9
12
94
0
76
36
2
23
38
1.67
105674--105720
15
3.1
15
100
0
94
14
19
31
34
1.92
111922--112145
64
3.5
63
81
7
206
32
20
20
25
1.98
112455--112513
12
4.9
12
95
0
100
35
1
23
38
1.65
112455--112500
7
7.4
7
73
26
50
32
0
26
41
1.56
112658--112719
15
4.1
15
97
0
106
17
16
32
33
1.92
112703--112758
22
2.8
19
75
17
60
26
17
28
26
1.98
114442--114468
2
13.5
2
100
0
54
51
0
0
48
1.00
115809--116094
43
6.7
42
83
5
301
23
24
19
32
1.98
115809--116094
128
2.2
126
81
7
310
23
24
19
32
1.98
115809--116094
85
3.4
86
82
5
280
23
24
19
32
1.98
118940--118972
16
2.1
16
100
0
66
57
24
12
6
1.57
119037--119106
10
7.2
10
69
23
51
57
18
11
12
1.65
119041--119105
16
4.1
16
89
0
103
56
20
12
10
1.65
123194--123434
132
1.8
132
81
2
297
39
12
12
36
1.80
124344--124386
14
3.0
14
86
3
50
11
13
65
9
1.48
124981--125034
2
27.5
2
96
3
101
50
0
0
50
1.00
128699--128810
56
2.0
56
96
0
206
32
8
14
44
1.76
129766--129828
29
2.2
29
100
0
126
39
17
23
19
1.92
129766--129840
29
2.6
29
93
0
114
40
18
22
18
1.92
143005--143048
14
3.0
14
83
9
52
68
2
0
29
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
143005--143048
16
2.9
15
86
6
54
68
2
0
29
1.02

Tables:   1

The End!