Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003142.1 Hibiscus syriacus cultivar Beakdansim tig00006613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  553945

Tables:   1   2   3   

This is table  3  of  3  ( 249 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
520328--520385
20
2.8
21
79
12
66
34
12
12
41
1.79
522860--522961
43
2.4
43
83
9
120
28
25
12
33
1.93
528505--528529
12
2.1
12
100
0
50
48
8
0
44
1.32
538905--539012
33
3.2
33
80
2
126
23
31
33
12
1.91
538976--539063
23
3.8
23
96
0
158
21
26
40
11
1.87
539074--539129
29
1.9
29
85
0
76
23
26
35
14
1.93
543973--544013
17
2.4
17
87
0
64
43
7
19
29
1.78
549373--549409
16
2.3
16
95
0
65
51
0
21
27
1.48
549463--549533
37
1.9
37
82
5
90
47
5
0
46
1.26

Tables:   1   2   3

The End!