genome.fa.s3198.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003198.1 Hibiscus syriacus cultivar Beakdansim tig00006731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  627338

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535948--536070	61	2.0	61	100	0	246	26	21	9	43	1.83
537692--537739	23	2.0	23	92	4	78	41	10	6	41	1.64
550470--550606	24	5.7	24	86	3	168	38	19	13	27	1.90
550470--550606	72	1.9	72	84	3	186	38	19	13	27	1.90
554960--554988	2	14.5	2	100	0	58	51	0	0	48	1.00
555199--555317	24	5.0	24	86	4	168	39	19	14	26	1.90
555199--555335	48	2.9	47	84	4	175	40	18	13	27	1.89
557803--557848	23	2.0	23	86	0	65	13	19	47	19	1.81
557816--557865	18	2.8	18	87	0	82	12	16	50	22	1.77
559281--559351	31	2.3	31	82	4	81	15	30	29	23	1.95
562438--562749	159	2.0	160	94	1	547	39	13	14	33	1.85
564803--564831	14	2.0	15	93	6	51	58	0	0	41	0.98
565050--565196	77	1.9	78	85	4	208	25	21	17	36	1.95
565092--565338	116	2.1	116	80	6	277	25	21	14	39	1.91
565259--565835	283	2.0	282	83	3	741	28	18	17	35	1.94
566432--566470	18	2.2	18	85	0	51	23	15	23	38	1.92
567223--567471	107	2.3	105	84	8	315	38	19	9	32	1.83
567223--567471	54	4.7	50	77	11	223	38	19	9	32	1.83
569574--569650	20	3.8	20	73	14	61	9	16	1	72	1.16
569580--569650	19	3.5	20	75	14	74	9	15	1	73	1.16
569586--569650	20	3.3	19	74	20	62	9	13	1	75	1.11
572050--572663	204	3.0	204	95	0	1122	36	16	13	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580759--580816	15	3.8	15	93	2	89	13	50	6	29	1.68
580833--581008	87	2.0	87	91	0	280	22	28	22	26	1.99
587628--587662	14	2.5	14	95	0	61	25	31	20	22	1.98
589816--589888	32	2.3	32	92	0	119	19	21	32	26	1.97
593136--593437	44	6.9	44	88	0	442	26	20	11	41	1.87
593194--593266	25	3.2	25	61	22	59	24	23	12	39	1.89
599792--600048	44	5.9	43	87	1	334	26	23	10	39	1.87
599800--600047	132	1.9	132	88	1	372	27	23	10	39	1.87
601395--601420	13	2.0	13	100	0	52	46	15	7	30	1.74
603472--604459	490	2.0	489	92	1	1642	38	14	13	33	1.85
610110--610141	8	4.0	8	100	0	64	37	0	0	62	0.95
612137--612221	33	2.6	34	84	3	102	48	14	7	30	1.70
612373--612416	23	2.0	20	83	12	52	47	4	0	47	1.22
614401--614441	21	2.0	20	85	4	55	51	0	0	48	1.00
616508--616533	13	2.0	13	100	0	52	46	15	7	30	1.74
618259--618344	18	4.9	17	78	10	93	43	10	11	34	1.76
618250--618344	35	2.7	36	83	3	113	43	11	10	34	1.76
623955--623995	22	1.9	22	85	5	57	21	7	9	60	1.52

Tables:   1   2   3

The End!