genome.fa.s3230.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003230.1 Hibiscus syriacus cultivar Beakdansim tig00006800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217729

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202251--202346	27	3.3	29	84	10	117	43	5	4	46	1.45
202265--202351	29	3.0	27	83	11	86	47	4	3	44	1.40
202310--202404	42	2.2	44	85	7	126	47	5	2	45	1.37
202226--202387	68	2.4	67	81	9	186	46	5	3	43	1.44
204194--204369	41	4.4	39	72	9	129	39	24	17	18	1.92
204336--204530	60	3.2	60	82	0	237	35	24	20	19	1.95
204316--204529	20	10.6	20	81	5	207	36	24	20	19	1.95
204908--204977	33	2.2	32	89	2	104	12	24	15	47	1.81
205056--205130	20	3.8	20	80	5	89	42	20	24	13	1.87
205068--205186	33	3.4	35	87	6	138	45	22	21	10	1.82
205114--205170	14	3.7	14	70	20	51	45	22	22	8	1.80
205097--205186	33	2.7	33	92	0	144	44	25	21	8	1.81
205204--205260	14	3.7	14	75	20	60	8	24	22	43	1.81
205182--205307	19	7.1	19	70	18	92	11	23	20	44	1.83
205187--205307	33	3.5	33	89	6	170	10	23	20	45	1.82
206992--207458	93	5.1	93	97	1	870	22	12	19	46	1.83
207506--207633	19	7.3	18	71	17	83	46	25	17	10	1.79
207562--207617	14	3.7	14	80	17	67	44	23	21	10	1.83
207543--207633	32	2.8	33	86	3	130	47	24	18	9	1.79
207635--207763	19	7.3	19	75	17	125	10	18	24	46	1.81
207651--207707	14	3.7	14	77	20	60	10	21	22	45	1.82
207635--207726	33	2.8	33	94	0	166	10	20	21	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209678--209713	14	2.6	14	95	0	63	33	0	22	44	1.53
209820--209920	19	5.6	19	82	14	133	42	17	23	15	1.88
209935--209989	14	3.6	14	76	21	56	10	21	20	47	1.80
209927--210116	33	5.5	33	86	10	192	14	21	17	46	1.84
209911--210202	19	16.7	19	78	18	323	14	21	18	46	1.84
209949--210202	70	3.6	71	88	9	341	13	20	18	46	1.83
212465--212489	12	2.1	12	100	0	50	0	28	0	72	0.86
212663--212709	24	2.0	24	87	8	69	38	21	14	25	1.92
213386--213595	20	10.5	20	81	6	183	20	17	24	37	1.93
213467--213716	60	4.2	57	75	10	153	20	18	26	35	1.95
213562--213659	20	4.8	20	77	3	79	21	18	23	36	1.95
213562--213718	41	3.9	41	70	14	110	18	17	25	38	1.93
216136--216232	47	2.1	45	83	7	115	43	6	11	39	1.66

Tables:   1   2

The End!