Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003245.1 Hibiscus syriacus cultivar Beakdansim tig00006822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69707

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3161--3200
6
6.7
6
97
0
53
52
15
25
7
1.68
3161--3200
12
3.3
12
92
0
62
52
15
25
7
1.68
15838--16372
265
2.0
266
88
3
792
38
13
20
27
1.90
22671--22949
83
3.4
82
81
4
294
30
15
22
31
1.95
22665--22816
41
3.7
40
69
17
121
28
17
22
30
1.97
22809--22940
41
3.2
40
71
12
97
30
15
22
31
1.95
22671--23007
83
4.1
81
77
4
266
29
16
21
32
1.95
22703--23007
165
1.8
165
79
4
355
30
16
21
32
1.95
27753--27844
26
3.5
26
100
0
184
29
22
23
23
1.99
28885--29048
88
1.9
88
81
2
204
32
25
15
26
1.96
28887--29065
44
4.1
44
77
7
166
31
24
16
28
1.96
32298--32384
23
3.2
30
63
24
73
34
10
2
52
1.48
32302--32386
29
3.1
29
62
19
74
32
10
2
54
1.48
32896--32949
21
2.6
21
90
0
90
25
14
27
31
1.95
32938--33112
20
8.6
20
80
13
153
13
24
22
40
1.89
32938--33112
40
4.3
41
79
12
184
13
24
22
40
1.89
32941--33092
41
3.7
42
81
8
170
13
23
23
40
1.90
33190--33252
6
11.0
6
98
1
105
30
52
17
0
1.45
33725--33755
6
5.2
6
100
0
62
0
16
48
35
1.46
34003--34069
20
3.4
20
74
8
57
58
1
0
40
1.07
37604--37644
21
2.0
21
90
9
66
73
2
7
17
1.17
37522--37635
59
1.9
58
82
10
142
70
2
10
16
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41619--41643
13
1.9
13
100
0
50
48
4
0
48
1.20
46754--46846
42
2.2
42
90
0
141
26
19
21
32
1.97
46804--46976
93
1.9
93
92
0
292
32
17
21
27
1.96
47441--47755
53
5.9
53
87
1
409
31
21
25
21
1.98
47441--47699
105
2.5
106
90
1
403
31
22
27
19
1.98
48121--48193
23
3.3
23
68
16
64
58
10
26
4
1.49
48116--48211
43
2.2
44
92
3
160
57
10
27
5
1.53
49297--49367
24
2.7
25
79
12
63
23
4
11
60
1.48
52174--52229
23
2.4
23
77
13
62
55
0
5
39
1.23
52396--52464
23
3.0
23
82
2
86
56
2
1
39
1.23
53203--53250
20
2.4
20
96
0
87
35
12
10
41
1.77
54406--54445
20
2.0
21
90
5
64
62
5
15
17
1.49
56527--56562
14
2.5
15
86
9
56
27
0
0
72
0.85
56548--56634
27
3.2
27
73
15
97
40
6
1
51
1.36
56553--56636
28
3.0
28
71
22
95
39
7
1
52
1.37
59388--59430
21
2.0
21
86
0
59
30
27
25
16
1.97
60127--60171
23
2.0
23
86
0
63
20
26
26
26
1.99

Tables:   1

The End!