genome.fa.s3260.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003260.1 Hibiscus syriacus cultivar Beakdansim tig00006850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203219

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162917--162983	29	2.3	29	78	0	71	32	22	5	38	1.78
163776--163839	30	2.1	30	86	11	87	32	20	6	40	1.77
168212--168247	18	2.0	18	88	0	54	19	30	25	25	1.98
177354--177498	30	5.0	28	75	12	96	39	6	4	49	1.49
177394--177522	29	4.4	30	79	14	126	41	7	4	46	1.53
177394--177522	57	2.2	59	81	10	142	41	7	4	46	1.53
183093--183151	31	1.9	31	89	0	91	40	5	10	44	1.60
183176--183218	22	2.0	22	100	0	86	51	13	0	34	1.42
183178--183226	22	2.2	22	88	3	71	55	14	0	30	1.40
183166--183776	54	11.4	54	75	14	554	53	12	0	34	1.39
183181--183496	80	3.9	80	89	6	517	53	13	0	32	1.41
183282--183339	18	3.4	18	72	18	61	56	12	0	31	1.35
183166--183729	166	3.5	166	81	10	705	52	13	0	34	1.40
183230--183684	134	3.4	131	90	5	562	52	13	0	33	1.41
183344--183392	22	2.2	22	85	3	62	55	12	0	32	1.37
183476--183518	22	2.0	22	95	0	77	51	11	0	37	1.39
183310--183776	188	2.5	191	82	11	639	52	12	0	34	1.39
183478--183526	22	2.2	22	85	3	62	55	12	0	32	1.37
183481--183630	80	1.9	80	97	0	282	52	15	0	32	1.43
183532--183606	22	3.2	23	75	17	82	54	17	0	28	1.43
183610--183652	22	2.0	22	90	0	68	51	13	0	34	1.42
183664--183706	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183666--183714	22	2.2	22	88	3	71	55	14	0	30	1.40
183709--183920	15	14.5	15	78	10	215	50	3	0	45	1.17
183361--183776	134	3.1	138	87	9	418	52	12	0	34	1.39
183629--183920	101	3.0	93	79	13	279	50	5	0	43	1.26
191401--191466	25	2.5	28	79	20	79	34	0	7	57	1.27
191401--191468	29	2.3	28	87	10	91	35	0	7	57	1.27
191369--191466	22	4.4	22	72	20	62	35	1	8	55	1.37
191368--191469	10	9.8	10	70	18	66	35	0	8	54	1.38
197110--197168	23	2.6	23	88	0	82	28	25	25	20	1.99
197236--197262	13	2.1	13	100	0	54	29	7	33	29	1.85
202100--202152	21	2.7	20	77	11	56	45	24	1	28	1.64
202316--202384	23	3.0	23	79	8	86	28	26	24	20	1.99
202411--202606	100	2.0	98	91	4	322	35	22	14	27	1.93

Tables:   1   2

The End!