genome.fa.s3267.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003267.1 Hibiscus syriacus cultivar Beakdansim tig00006866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204893

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159709--160030	2	170.5	2	68	27	158	52	6	0	40	1.33
159709--160020	59	5.5	56	75	20	244	52	6	0	40	1.32
159707--160024	7	43.9	7	73	21	232	52	6	0	40	1.31
160241--160368	58	2.2	59	80	7	143	50	3	14	32	1.58
161799--161825	2	13.5	2	100	0	54	48	0	0	51	1.00
163624--163668	23	2.0	23	90	0	72	24	26	26	22	2.00
163636--163950	149	2.1	149	96	1	578	33	21	18	26	1.96
165363--165407	21	2.1	21	87	0	63	15	24	28	31	1.96
168522--168566	23	2.0	23	90	0	72	24	26	26	22	2.00
168542--168848	149	2.1	149	98	0	587	34	21	16	26	1.95
170262--170306	21	2.1	21	87	0	63	15	24	28	31	1.96
172740--172844	37	2.8	37	80	0	120	41	13	13	31	1.83
177678--178214	183	2.9	183	94	0	923	27	20	21	29	1.98
179394--179510	36	3.1	36	67	4	90	29	17	14	38	1.90
179353--179527	72	2.4	75	83	8	200	28	17	12	42	1.84
179353--179564	72	2.9	72	80	8	182	27	16	13	41	1.86
179543--179695	39	3.6	39	69	19	117	28	21	13	36	1.92
179598--179917	106	3.1	104	91	3	511	30	20	12	36	1.89
179817--179892	36	2.1	36	90	0	116	22	19	15	42	1.89
180092--180720	105	6.0	104	90	3	901	34	26	17	21	1.96
180092--180720	209	3.0	209	89	2	919	34	26	17	21	1.96
181263--181367	37	2.8	37	85	0	138	41	14	14	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182251--182286	2	18.0	2	88	0	54	44	0	0	55	0.99
188203--188250	13	3.8	13	77	2	53	64	14	2	18	1.38
189692--189906	107	2.0	107	97	0	403	28	29	21	20	1.98
190627--190660	9	3.9	9	84	7	52	61	2	0	35	1.11
190623--190661	17	2.4	17	95	4	71	61	5	0	33	1.18
190697--190744	20	2.4	19	83	10	60	47	0	27	25	1.52
193145--193363	90	2.4	89	95	1	393	35	22	17	25	1.95
193356--193785	39	11.2	39	87	1	555	36	15	18	29	1.92
193788--193885	34	3.1	31	75	13	94	37	10	21	30	1.87
193783--193984	33	6.1	31	69	17	122	38	10	18	31	1.86
193783--193984	66	3.1	66	79	9	216	38	10	18	31	1.86
193985--194057	16	4.7	15	74	14	60	1	16	4	78	0.98
193990--194057	11	5.9	11	76	20	59	1	16	4	77	0.99
194649--194780	7	18.9	7	72	14	78	21	1	29	47	1.60
194649--194780	14	9.4	14	74	8	108	21	1	29	47	1.60
197350--197376	11	2.5	11	100	0	54	25	25	29	18	1.98
197394--197481	23	3.8	23	82	8	97	25	21	23	29	1.99
197417--197482	24	2.8	24	95	2	116	21	21	24	33	1.97
197505--197580	31	2.5	31	97	2	145	21	15	18	44	1.86
201657--201713	3	19.7	3	86	13	84	36	0	0	63	0.95
204791--204829	21	1.9	20	85	15	53	41	0	5	53	1.23

Tables:   1   2

The End!