genome.fa.s3298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003298.1 Hibiscus syriacus cultivar Beakdansim tig00006938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121966

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3534--3629	21	4.7	21	67	3	61	22	18	22	35	1.96
12260--12332	2	36.5	2	100	0	146	50	0	0	49	1.00
21925--21969	12	3.8	12	85	2	65	51	0	0	48	1.00
22918--22948	16	1.9	16	93	0	53	35	12	19	32	1.90
30134--30210	29	2.7	29	97	0	145	23	27	35	14	1.93
32293--32325	17	1.9	17	93	0	57	45	12	6	36	1.66
32310--32378	22	3.0	22	73	19	77	47	7	4	40	1.51
32561--32596	11	3.4	11	88	3	56	58	5	0	36	1.22
32538--32883	14	25.8	13	72	20	168	45	9	2	43	1.49
32593--32883	26	11.7	26	75	11	252	43	9	2	43	1.50
32549--32940	123	3.2	124	94	2	677	44	9	2	43	1.48
32784--32928	11	11.9	11	67	23	62	43	10	2	44	1.50
32700--32902	97	2.1	94	82	10	241	43	11	2	42	1.53
35769--35827	26	2.3	24	78	16	64	40	3	8	47	1.51
36643--36708	28	2.4	28	85	10	98	54	12	0	33	1.37
36664--36726	21	3.0	21	83	4	74	52	15	0	31	1.44
37251--37288	20	1.9	20	88	0	58	23	50	10	15	1.75
37277--37314	20	1.9	20	88	0	58	28	47	7	15	1.74
37366--37488	29	4.2	29	96	0	228	17	36	30	14	1.90
37591--37645	2	27.5	2	100	0	110	49	0	0	50	1.00
43895--44002	2	54.0	2	98	0	207	49	0	0	50	1.07
45841--46363	83	6.3	84	84	1	595	33	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45853--46441	167	3.6	166	82	2	668	32	24	18	23	1.97
45880--46363	251	1.9	249	85	1	664	33	24	18	23	1.97
50160--50199	3	12.7	3	89	5	53	40	0	0	60	0.97
50163--50204	9	4.6	9	83	13	50	42	0	0	57	0.99
51862--51900	19	2.1	18	85	4	51	53	2	0	43	1.14
52395--52462	28	2.5	28	83	9	79	32	5	1	60	1.30
54497--54571	26	2.8	25	75	15	71	18	9	10	61	1.55
59969--60134	75	2.2	75	84	6	219	28	17	21	31	1.96
62131--62821	46	15.0	46	91	3	1077	24	21	19	33	1.97
62131--62821	185	3.7	182	92	2	1105	24	21	19	33	1.97
62131--62821	139	5.0	138	93	1	1102	24	21	19	33	1.97
63029--63069	3	13.7	3	85	10	57	39	0	0	60	0.96
63029--63074	9	5.2	9	85	12	51	41	0	0	58	0.98
64534--64785	137	1.8	139	83	6	343	39	6	6	47	1.55
68789--68838	23	2.2	23	92	0	82	38	8	22	32	1.83
68752--68914	87	1.9	87	92	2	274	41	11	14	32	1.81
69127--69155	14	2.0	15	93	6	51	27	13	13	44	1.82
68909--69431	200	2.6	195	79	7	581	31	16	13	38	1.88
72578--73715	200	5.7	199	86	5	1445	30	13	16	39	1.87
73818--73920	36	2.9	36	98	0	197	24	19	18	37	1.94
75068--75141	6	12.3	6	83	0	76	28	28	2	40	1.70
76278--76327	15	3.3	15	91	0	73	34	2	46	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76803--77758	198	4.9	198	90	4	1530	30	15	16	36	1.90
76803--77758	393	2.5	387	91	3	1562	30	15	16	36	1.90
78090--78138	19	2.6	19	90	3	73	57	10	2	30	1.43
78897--78964	13	5.5	13	74	25	60	17	47	23	11	1.81
78915--78978	30	2.1	30	91	0	101	17	45	23	14	1.84
78896--78955	18	3.4	18	88	2	95	16	50	23	10	1.75
78979--79054	29	2.5	30	87	4	100	19	9	23	47	1.78
78979--79062	31	2.8	29	85	3	105	20	9	22	47	1.78
79040--79112	29	2.5	29	74	12	69	27	8	20	43	1.80
86181--86255	23	3.2	23	84	5	98	17	48	24	10	1.79
86190--86269	24	3.4	24	86	5	101	16	43	25	15	1.86
86274--86405	29	4.7	29	86	5	164	27	9	14	49	1.73
86303--86420	56	2.1	58	82	6	143	27	9	16	46	1.78
86387--86456	29	2.4	29	83	4	79	28	5	18	47	1.71
89153--89188	17	2.1	17	100	0	72	30	11	8	50	1.67
92070--92669	182	3.3	179	84	5	728	28	17	13	41	1.86
94113--94147	18	1.9	18	100	0	70	48	11	11	28	1.74
95154--95206	22	2.4	22	96	0	97	49	5	7	37	1.55
96890--97316	21	20.4	21	75	14	357	22	20	23	34	1.97
98074--98104	6	5.2	6	100	0	62	0	16	48	35	1.46
98193--98257	19	3.2	19	76	16	76	32	20	21	26	1.97
98201--98272	21	3.4	21	74	14	76	38	20	18	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98201--98282	21	3.8	21	72	15	69	37	20	19	21	1.94
98194--98332	42	3.3	42	85	6	176	33	23	19	23	1.97
98270--98385	21	6.1	20	73	18	95	29	29	20	20	1.98
98285--98393	54	2.0	53	91	1	173	30	28	20	21	1.98
103256--103607	176	2.0	176	96	0	650	34	16	20	28	1.94
104048--104436	83	4.7	81	84	6	460	33	21	17	28	1.95
104048--104436	166	2.3	166	85	6	513	33	21	17	28	1.95
105219--105260	19	2.1	21	91	8	70	33	21	19	26	1.97
106456--106510	26	2.1	27	86	3	76	54	20	3	21	1.59
106534--106597	32	1.9	33	90	6	103	51	15	9	23	1.72
107476--107518	15	2.9	15	82	0	59	20	30	6	41	1.79
110349--110388	2	20.0	2	100	0	80	0	50	0	50	1.00
113853--113892	15	2.7	15	88	0	53	45	12	32	10	1.75
113866--113894	15	1.9	15	100	0	58	44	13	34	6	1.71
115807--115879	33	2.2	33	92	0	119	31	19	10	38	1.86
116349--116415	18	4.4	15	68	22	50	52	1	0	46	1.09
116335--116457	58	2.1	57	79	10	135	49	0	1	47	1.16
116558--116602	23	2.0	23	86	0	63	53	2	2	42	1.25
116853--116887	14	2.5	13	86	13	52	42	8	14	34	1.76

Tables:   1

The End!