genome.fa.s3308.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003308.1 Hibiscus syriacus cultivar Beakdansim tig00006960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85614

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4599--5033	36	11.8	37	80	12	398	45	4	4	46	1.43
4571--5033	35	12.5	36	78	15	203	44	3	5	46	1.44
4738--4874	12	11.1	12	67	17	57	47	5	1	45	1.36
4686--5011	35	8.8	41	83	10	254	45	4	3	45	1.42
5083--5151	29	2.4	29	80	4	77	15	4	5	73	1.18
6412--6462	2	25.5	2	95	0	93	49	1	0	49	1.12
6611--6657	24	2.0	24	83	8	60	27	8	2	61	1.36
8960--9218	95	2.7	95	86	4	333	34	18	15	30	1.93
10336--10618	84	3.4	84	85	1	388	31	23	19	25	1.98
10552--10685	70	1.9	69	83	4	171	29	20	20	29	1.98
10647--11776	84	13.6	83	81	4	1072	32	23	19	24	1.98
10647--11653	249	4.1	247	88	2	1268	31	24	19	24	1.98
10337--11776	330	4.4	328	81	5	1466	32	23	19	24	1.98
12291--12586	36	8.4	35	78	16	260	46	5	4	43	1.46
12360--12436	27	2.8	27	82	5	82	50	5	2	41	1.38
12296--12590	104	2.8	103	79	11	323	47	5	4	43	1.46
12403--12586	71	2.6	70	86	6	255	48	5	4	41	1.48
12499--12652	83	1.9	81	83	5	193	46	2	6	44	1.43
12572--12596	2	12.5	2	100	0	50	52	0	0	48	1.00
12536--12632	47	2.2	46	85	7	128	47	1	4	47	1.28
13580--13609	14	2.1	14	100	0	60	20	16	50	13	1.78
13953--13991	17	2.3	17	90	0	60	15	0	2	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13951--13989	21	1.9	20	89	5	60	15	0	2	82	0.79
13952--14019	28	2.5	25	81	13	64	16	2	2	77	1.00
13951--14032	10	8.6	10	69	20	52	17	3	2	76	1.03
13945--14029	16	5.2	16	72	20	52	17	4	2	75	1.08
14102--14157	25	2.3	24	82	14	62	16	8	1	73	1.17
16940--17015	3	25.7	3	81	17	88	34	1	0	64	1.02
16927--17016	18	5.2	17	77	17	87	30	1	0	68	0.96
16946--17015	30	2.4	30	93	6	119	35	1	0	62	1.04
16946--17028	30	2.9	29	82	8	82	39	1	0	59	1.05
18777--18813	18	2.1	18	90	10	58	32	0	0	67	0.91
21955--21985	14	2.2	14	94	0	53	19	12	3	64	1.41
29533--29842	164	1.9	165	95	0	568	34	11	12	40	1.81
29858--30108	37	6.9	36	72	5	182	31	19	11	37	1.88
29839--30101	36	7.2	36	73	3	222	31	18	12	38	1.87
29839--30116	73	3.8	73	88	1	407	31	18	12	37	1.88
30267--30356	3	30.7	3	86	12	125	34	1	0	64	1.01
31640--31703	2	32.5	2	96	3	121	48	0	0	51	1.00
32277--32313	18	2.1	18	90	10	58	32	0	0	67	0.91
33518--33581	19	3.2	20	72	14	53	43	1	1	53	1.19
33527--33576	20	2.5	20	78	12	59	40	2	2	56	1.22
33494--33580	31	2.8	30	79	10	95	41	1	3	54	1.25
34305--34391	31	2.8	30	81	10	95	54	3	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34300--34367	19	3.5	20	73	15	54	54	1	2	41	1.24
39912--40031	62	1.9	64	87	3	181	66	0	7	25	1.23
40049--40084	19	1.9	18	88	5	54	63	0	11	25	1.27
40110--40148	18	2.2	18	90	0	60	71	0	7	20	1.10
40841--40874	4	8.8	4	90	6	52	79	0	2	17	0.86
40838--40874	19	1.9	19	94	0	65	81	0	2	16	0.81
40816--40875	23	2.7	21	82	14	68	78	1	5	15	1.00
40819--40875	15	3.8	15	72	13	55	77	1	5	15	1.03
41727--41860	44	3.1	43	65	12	103	23	26	23	27	2.00
41698--41906	86	2.4	86	86	0	283	22	23	23	29	1.99
45770--45816	23	2.2	22	85	11	62	51	10	17	21	1.75
47842--47893	20	2.5	20	79	14	61	76	1	1	19	0.97
48576--48603	12	2.3	12	100	0	56	60	7	0	32	1.24
48946--48997	12	4.4	11	76	13	50	76	1	1	19	0.97
54278--54433	60	2.6	60	82	4	170	32	25	5	37	1.78
54505--54603	29	3.3	29	68	13	76	41	5	20	33	1.74
54488--54619	60	2.2	60	82	5	151	37	4	23	34	1.75
56704--56741	16	2.3	17	86	4	51	39	2	13	44	1.57
62732--62769	20	1.9	20	89	10	60	31	13	10	44	1.77
65430--65480	23	2.2	23	82	0	57	45	1	1	50	1.24
65468--65536	19	3.6	19	72	14	61	47	0	2	49	1.16
65624--65673	8	6.4	8	73	13	50	40	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65613--65673	23	2.6	24	82	7	72	42	1	1	54	1.20
66446--66505	13	4.6	13	76	19	63	30	3	0	66	1.07
69862--69896	16	2.2	16	94	0	61	54	0	45	0	0.99
71388--71424	2	18.5	2	100	0	74	51	0	0	48	1.00
71471--71519	18	2.8	18	80	20	59	61	6	2	30	1.32
71522--71619	23	4.1	24	76	15	71	67	2	5	25	1.22
71546--71618	25	3.0	24	78	11	78	71	2	4	21	1.16
71654--71684	13	2.3	14	94	5	55	74	0	6	19	1.03
73280--74494	84	14.5	84	84	1	1443	23	18	24	33	1.97
73320--74494	418	2.8	418	87	2	1687	24	18	24	33	1.97
75570--75831	94	2.7	94	88	5	357	33	17	16	32	1.92
78019--78078	31	1.9	31	100	0	120	50	6	6	36	1.55
80615--80639	12	2.1	12	100	0	50	60	0	8	32	1.26
80694--80754	19	3.3	19	72	20	58	77	6	1	14	1.05
81078--81143	23	2.8	23	79	2	69	63	0	7	28	1.21
81215--81260	24	2.0	23	82	4	56	67	0	4	28	1.10
82471--82522	22	2.3	23	80	6	61	51	1	1	44	1.23

Tables:   1

The End!