genome.fa.s3310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003310.1 Hibiscus syriacus cultivar Beakdansim tig00006964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101324

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17003--17044	21	2.0	21	95	0	75	26	28	21	23	1.99
17220--17309	30	3.0	30	91	3	146	40	16	7	35	1.78
33958--34027	25	2.9	24	79	6	61	31	21	21	25	1.98
33950--34058	23	4.6	24	76	7	107	32	22	22	23	1.98
33954--34058	46	2.2	48	84	5	133	31	22	21	23	1.98
34198--34241	15	2.9	15	86	0	70	31	22	11	34	1.90
34765--34814	20	2.5	20	87	6	66	22	26	14	38	1.91
39700--39753	28	1.9	28	96	0	99	18	12	7	61	1.54
52487--52523	19	1.9	19	100	0	74	43	10	21	24	1.84
54203--54260	26	2.2	26	96	0	107	29	20	20	29	1.98
57919--57974	2	28.0	2	100	0	112	50	0	0	50	1.00
58850--59026	59	3.0	60	84	5	232	34	16	19	28	1.94
58826--59019	59	3.3	59	83	5	225	32	18	17	31	1.94
60229--60265	20	1.9	19	89	10	58	35	13	29	21	1.92
60786--61006	45	5.4	44	73	22	230	34	10	26	27	1.90
60831--60974	34	3.9	34	76	18	144	35	9	26	28	1.88
60776--61097	79	4.1	79	93	0	511	38	10	24	26	1.88
66285--66361	23	3.5	21	73	22	68	40	16	5	37	1.71
66300--66362	23	2.7	23	92	0	99	38	17	4	39	1.71
66779--66851	23	3.2	23	90	0	119	39	21	4	34	1.73
65892--69663	489	7.8	489	92	4	6292	40	10	7	40	1.68
67267--67339	23	3.2	23	84	3	94	39	19	5	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67752--67801	23	2.2	23	89	7	75	40	20	6	34	1.77
68210--68282	23	3.3	21	73	19	58	38	20	5	35	1.76
68224--68287	23	2.8	23	95	0	110	35	23	4	35	1.76
65892--69663	950	3.9	953	94	2	6394	40	10	7	40	1.68
68703--68752	23	2.2	23	92	0	82	42	22	2	34	1.65
69168--69240	23	3.2	23	92	0	119	38	21	5	34	1.77
72483--72562	21	3.7	21	69	21	67	32	27	20	20	1.97
77425--77477	24	2.2	24	100	0	106	16	20	39	22	1.92
79302--79389	23	3.9	23	73	14	85	29	23	22	23	1.99
82127--82206	38	2.1	38	86	9	110	80	1	15	3	0.92
82141--82201	10	6.3	10	79	12	58	80	0	16	3	0.84
82140--82197	15	4.1	13	76	14	53	81	0	15	3	0.83
85175--85216	14	2.9	14	82	3	57	2	21	4	71	1.16
87946--87981	3	11.7	3	88	5	54	63	2	0	33	1.08
87955--88001	16	2.8	16	87	6	58	57	4	2	36	1.30
88060--88216	32	5.0	30	76	13	124	43	6	3	46	1.47
88131--88193	27	2.3	29	86	8	87	39	9	3	47	1.52
88023--88320	33	8.9	33	75	19	214	42	7	3	45	1.50
88181--88332	37	4.2	36	80	10	147	44	8	2	44	1.48
88301--88328	13	2.2	13	100	0	56	46	7	0	46	1.30
89500--89606	41	2.6	41	81	0	124	34	15	16	32	1.91
98563--98612	25	2.0	26	84	11	68	34	0	4	62	1.14

Tables:   1

The End!